Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1508g00010 ATGGCGGCGATGTCCATCTCCGTCGTCTTTCTCTTCTCTTTCATCTCTTTTCACCGTATGTATTCCTTGGCGGCAAGTTCAGAGATCATTATCACACAGGACGTCGTTATCAGGGACGAGGGGCTTGAGACATTGGTGTCTGAAGAGCTCAACTTCACCTTCGGTTTCTTCGGTTCGGACAACTCCTCTTCCCGCTACGTCGGAATTTGGTACCACAGCATTCCCGCGACACCTGTTATATGGGTCGCAAACGGCGACAAACCCATCAACGGCACAGGAGGATCCATCACTATTGCGGATGACGGCAACCTCGTAGTCCACGATGGTGCCAAGAACCTTGTCTGGTCCACCCAAGTTTCCATCGATAGCAGCACCAAAAACTGCTCGGCGAAGCTTCGTGAAACTGGTAACCTCGTTCTCTCATGCGAAAGGAAAGACTTGTGGCAAAGCTTTGAGAATCCAACGGATACATTCATGCCTGGTATGAGGGTTCCAGTGGGGGCTTCAACTGGGAATAGTAGTGGCTATGTGTTCACTTCATGGAAATCGTCAACGGATCCTTCGAAGGGAAACTACACCATGGGGGTGGATCCTAAAGGGTTACCTCAGATAGTGGTTTGGGAAGGAGACAAAAGAAGGTGGAGAACGGGGTATTGGGATGGTATAATGTTTGAAGGGGTGTCTATGGCAGGAAATTATCTTTACGGTTTTACGCTTAATGGGGATGGTAAAGGAGGTAGGTATTTCATATATAACCCCGGCACTGATAAGGTGAGGTTTCAAATTGGGTGGGATGGCTATGAGAGAGAGTTCAGGTGGAATGAGGATGAGAAACGCTGGGATGTGGTTCAGAGAGGGCCTTCGCATGAGTGTGAGGTTTACAACAAGTGTGGGAGTTTCGCGGCGTGTGATATGGCCACTTCGAATTCACCTGTTTGTACTTGCATACGAGGTTTTGAACCGAAGAACAGGGATCGGTGGGGTAAGGGGAACTGGTCGGGTGGGTGTACGAGGATGACTCCACTCAAGGCTCAGAGGGAGAATGTTACTTCCGCTGACACTACTCAGGTTAGCGTCGGAGAGGATAAGTTCTTGGAGCTTAGTTCTATGAGGTTGCCGGATTTCGCAAGTGTGGTTGGCACGAATGATTGTCAGAAAGTGTGTTTGAACGATGATTCTTGTACGGCATATGCCAATGTTAATGGAATAGGGTGCATGGTGTGGAATGTCGATTTGGTTGACATTCAACATCATGGTACTGGAGGAAATACACTCAATATCCGTCTCGCTCATTCTGATTTAGATGGAGGTAAAAAGAACATGATTGCGATAATATCTGCTGTTGTGGCGGGGTTAATCTGCCTAGGAATCATTGTATGGCTGGTGTATAGATTCAAGGGAAAACTTAAAGTTTCCTCAGCTTCTTGTTGCAAGAATAGTGATGTACTGCCAGTTTATGATGGAAGCAGGAGCAGAGATATGTCAGCAGAATTTTCAGGATCAGCTGATCATAGTTTGGAGGGGAGCCAGCTAAGCGGGCCAGAATTTCCACTTTTCAATTTCAGTTGCATTTCAATAGCCACAAACAATTTTTCAGAAGAAAATAAGCTTGGCAAAGGTGGCTTTGGACCTGTCTACAAGGGAAAGCTTCCAGGCGGAGAACAAATAGCTGTTAAGAGGCTTTCAAGACGGTCTGGTCAAGGCTTAGAGGAGTTCAAGAATGAAATGATGCTGATAGCCAAACTACAGCACCGAAATCTGGTTAGACTAATGGGTTGTAGTATTCAAGGGGAAGAGAAGTTGCTGGTGTATGAATACATGCCAAACAAAAGCTTGGATTGTTTTTTATTTGATCCATTCAAACAAACACAACTAGATTGGAGAAGACGGTTTGAAATCATTGAAGGCATTGCAAGAGGATTGCTCTACCTGCACCGAGATTCAAGACTTAGAATAATTCATCGAGATTTAAAAGCGAGTAACATTTTGCTGGATGAAAACATGAACCCAAAGATATCAGACTTTGGATTGGCTAGGATATTTGGTGGGAACCAGAATGAAGCCAATACAAACAGAGTAGTTGGTACATATGGTTATATGGCCCCTGAGTATGCAATGGAAGGTCTGTTTTCTGTCAAATCGGATGTATATAGTTTTGGTGTATTACTACTAGAAATTTTGAGTGGCCGCAGAAACACCAGTTTTCGACACTCTGATGACTCCAGCCTCATAGGATATGCGTGGCATCTTTGGAATGAACAGAGAGCAATGGAGCTAATCGATCCATGCATTCGTGATTGTAGTCCTAAAAGCAGAGCTTTGAGATGCATACACATAGGGATGTTATGTGTGCAAGATTCAGCAGCTCATAGACCAAACATGTCAGCTGTGGTGTTGATGCTGGAAAGTGAAGCAACAACTCTTCCCACGCCTACGCAACCTTTGATTACTTCCATGAGGAGAACTGAGGACAGACAATTTTACATGGAAGGCCTTGATGTTTCAAATGATTTGACAGTCACAATGGTGGTAGGGAGATAG 2541 0.451 MAAMSISVVFLFSFISFHRMYSLAASSEIIITQDVVIRDEGLETLVSEELNFTFGFFGSDNSSSRYVGIWYHSIPATPVIWVANGDKPINGTGGSITIADDGNLVVHDGAKNLVWSTQVSIDSSTKNCSAKLRETGNLVLSCERKDLWQSFENPTDTFMPGMRVPVGASTGNSSGYVFTSWKSSTDPSKGNYTMGVDPKGLPQIVVWEGDKRRWRTGYWDGIMFEGVSMAGNYLYGFTLNGDGKGGRYFIYNPGTDKVRFQIGWDGYEREFRWNEDEKRWDVVQRGPSHECEVYNKCGSFAACDMATSNSPVCTCIRGFEPKNRDRWGKGNWSGGCTRMTPLKAQRENVTSADTTQVSVGEDKFLELSSMRLPDFASVVGTNDCQKVCLNDDSCTAYANVNGIGCMVWNVDLVDIQHHGTGGNTLNIRLAHSDLDGGKKNMIAIISAVVAGLICLGIIVWLVYRFKGKLKVSSASCCKNSDVLPVYDGSRSRDMSAEFSGSADHSLEGSQLSGPEFPLFNFSCISIATNNFSEENKLGKGGFGPVYKGKLPGGEQIAVKRLSRRSGQGLEEFKNEMMLIAKLQHRNLVRLMGCSIQGEEKLLVYEYMPNKSLDCFLFDPFKQTQLDWRRRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEILSGRRNTSFRHSDDSSLIGYAWHLWNEQRAMELIDPCIRDCSPKSRALRCIHIGMLCVQDSAAHRPNMSAVVLMLESEATTLPTPTQPLITSMRRTEDRQFYMEGLDVSNDLTVTMVVGR 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1508g00010 846 SMART serkin_6 531 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00010 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 496 606 - -
Vium1508g00010 846 Gene3D - 33 151 IPR036426 -
Vium1508g00010 846 SMART blect_4 34 154 IPR001480 -
Vium1508g00010 846 CDD PAN_AP_plant 361 430 - -
Vium1508g00010 846 Gene3D Transferase(Phosphotransferase) domain 1 607 812 - -
Vium1508g00010 846 ProSiteProfiles PAN/Apple domain profile. 359 430 IPR003609 -
Vium1508g00010 846 CDD STKc_IRAK 537 802 - -
Vium1508g00010 846 Pfam Protein tyrosine and serine/threonine kinase 534 799 IPR001245 GO:0004672|GO:0006468
Vium1508g00010 846 SMART ntp_6 359 429 IPR003609 -
Vium1508g00010 846 SUPERFAMILY Protein kinase-like (PK-like) 516 828 IPR011009 -
Vium1508g00010 846 CDD B_lectin 43 154 IPR001480 -
Vium1508g00010 846 Gene3D Phosphorylase Kinase; domain 1 507 606 - -
Vium1508g00010 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Vium1508g00010 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 221 IPR036426 -
Vium1508g00010 846 Pfam D-mannose binding lectin 79 182 IPR001480 -
Vium1508g00010 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 151 - -
Vium1508g00010 846 ProSiteProfiles Protein kinase domain profile. 531 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00010 846 Pfam PAN-like domain 360 415 IPR003609 -
Vium1508g00010 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 792 - -
Vium1508g00010 846 ProSiteProfiles Bulb-type lectin domain profile. 27 153 IPR001480 -
Vium1508g00010 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 607 809 - -
Vium1508g00010 846 PIRSF SRK 1 846 IPR024171 GO:0004674
Vium1508g00010 846 Pfam S-locus glycoprotein domain 214 323 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1508g00010 Vium-Chr1508 37513 41447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1508g00010 434 814 Receptor kinase-like Gene Family AT4G23230 54.188 5.92e-134 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1508g00010 PK_Tyr_Ser-Thr 4.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1508g00010 - - gmx:102660295 1424.84