Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1508g00009 ATGCCAGGTTTAGTATTATTTCTCTTTTGGTTCTTGGCATCACACATCACAATTTCATTCTCCTCAGACACCTTAACCCCAACGCAAACTCTTCTAACCAACCAAACCCTGGTGTCACCAAGCCAAGTCTTCGCTCTGGGCTTCTTCTCCGGGATCAATTCCTCTTGGTACTTAGGCATATGGTACAACAACATCAGCAACGGACCCATAGTATGGGTTGCCAACAGAGACAACCCTCTTCGCAACTCCACAGGATTTCTAACCATCGGAGAAAACAAAAACATGGTTCTGACAACTCCGTCAGGGGAATCTGTTTGGTCCTCCAATATCACCGAAGCCAACAACCCCATTCTTCAGCTCTTGGACACGGGAAATCTAGTTCTCAGAGAAGAAAACGTAACTGACCCCACAAACTATCTCTGGCAAAGCTTCGATTACCCAACAGACACACTCTTACCTGGGATGAAAATGGGGTGGAACCTAGACACTGGCGTGGAGAAACACATAACCTCGTGGAAAAGCGAAGGAAAAGACCCTTCGAGTGGAAATTACTCTTTCAAGATAGATCCTCGTGGGATACCAGAAATTTTCTTGTGGCGTGACGATAATATCATATACAGAAGTGGGCCTTGGAACGGCGAGAGATTCAGTGGGGTACCAGAGATGCAACCTGAAACTGACTCCATCACGTTTAGTTTTTCATACGATAACCATGGTGTGTACTATTCCTTCTCCATCGGGAACAGTTCTATTCTGTCGAGGCTAGTTGTGACTTCGGGTGCCGATCAACTTCAGCGTCTTACTTGGGTGCCAAGCAGCAACACATGGACCAAGTTTTGGTATGCACCTAAGGATCAGTGCGATGATTACAAAGCGTGCGGTTCTTATGGTTTGTGTGACAGCAACGCCTCGCCGGTTTGCACTTGTATGAGAGGGTTCAGTCCGAAGAACCAGCAGGCGTGGAATTTGAGAGACGGATCTGATGGGTGTGTGAGGAAGACGAATTTGGATTGTGGGAGTGACAAGTTTTTGCATGTGGAGGACGTGAAGTTGCCAGAGACAAGTATTGTGTTTTCGAACAGGAGCATGAACCTAGAAGAGTGTAAAGATTGGTGTCGCAGGAATTGTTCTTGCACTGCTTATGCCAACATTGAGGTCACAAACGGAGGAACCGGGTGTGTTACGTGGAGTGGTGAACTCATAGACATGAGGCAGTATGCTTCGGGTGGACAAGATCTCTTTGTCAGAATAGCAGCTTCTGATGCAGAGGACACTGCAGATGGGTCTCAAAAGTCAAACCATATCGGCGAGATTATAGGAATTACAATTTCTGCTGCGGTAGTAATTGTCGGACTGGTTGTGATTTACTGGAAGAAGAGGAAAGTGTTAGGTATATCGAATGTGAAGACTACCCCCAGAGGTTCTTTCCAAAGAAGTAGAGAATTGCTGACAAGTGACGGGGTACTTTCAACTAACAGAGAAAACTCTGGAGAAAGGAACATGGATGACATAGAGTTGCCAATGTTTGATTTTAAAACCTTAGCAATGGCCACAAACAACTTCTCAGAAGCAAATAAACTTGGACAAGGAGGGTTTGGTATTGTTTACAGGGGAAGGCTGATGGAAGGCCGTGATATTGCAGTGAAGAGGTTATCAAAAAACTCATCGCAAGGAGCTGAAGAATTTAAGAATGAGGCCAAGTTAATTGTCAGACTTCAACATCGAAATCTTGTTCGGCTCTTTGGATGCTGCGTTGAGATGGATGAGAAGTTGCTAGTGTATGAGTACATGGAAAACAGAAGCCTTTATTCCATTTTGTTTGACGAAGCCAAAAAACCCATGTTGGACTGGAACAGACGCTACAACATTATATGTGGTACAGCTAGAGGCCTACTTTATCTGCACCATGATTCCAGACTCAGGATTATCCACAGGGATCTCAAGGCAAGCAACGTTCTACTTGACAGTGAAATGAACCCAAAGATATCAGACTTTGGGATGGCCAGACTTTTTGGCGCGAATCAGACAGAAGGAAACACACTAAGAGTTGTTGGAACATATGGTTACATGTCTCCTGAATATGCCATGGACGGAACCTTCTCGGTGAAATCTGATGTTTTTAGTTTTGGAGTGCTAGCGCTGGAAATTATAACTGGGAAGAAAAATAGAGGATTCTATTACTCAAACGATGACATGAATCTTCTAGGGCATGCATGGAGACACTGGAGAGATGGCAGTGCATTGGAACTTGTTGATTCATCAATTGGCGATTCGTATTCACCATCTGAAGTTCTCAGATGCGTACACGTTGGACTCTTGTGTGTCCAAGAACGTGCAGAAGACAGGCCAACAATGTCTTCAGTGATGTTGATGCTGAGTAGTGAATCTTCGCTAATGCCACAACCCAGAAACCCTGGATTTTCCTTAGGGAAGAATCCTGCGGAGATTGATTCTAGTTCAAGTAAGCAAGATGAATCATGGAGTGTGAACCAAGTTACAGTCACATTGCTAGATGCTAGGTAG 2523 0.4467 MPGLVLFLFWFLASHITISFSSDTLTPTQTLLTNQTLVSPSQVFALGFFSGINSSWYLGIWYNNISNGPIVWVANRDNPLRNSTGFLTIGENKNMVLTTPSGESVWSSNITEANNPILQLLDTGNLVLREENVTDPTNYLWQSFDYPTDTLLPGMKMGWNLDTGVEKHITSWKSEGKDPSSGNYSFKIDPRGIPEIFLWRDDNIIYRSGPWNGERFSGVPEMQPETDSITFSFSYDNHGVYYSFSIGNSSILSRLVVTSGADQLQRLTWVPSSNTWTKFWYAPKDQCDDYKACGSYGLCDSNASPVCTCMRGFSPKNQQAWNLRDGSDGCVRKTNLDCGSDKFLHVEDVKLPETSIVFSNRSMNLEECKDWCRRNCSCTAYANIEVTNGGTGCVTWSGELIDMRQYASGGQDLFVRIAASDAEDTADGSQKSNHIGEIIGITISAAVVIVGLVVIYWKKRKVLGISNVKTTPRGSFQRSRELLTSDGVLSTNRENSGERNMDDIELPMFDFKTLAMATNNFSEANKLGQGGFGIVYRGRLMEGRDIAVKRLSKNSSQGAEEFKNEAKLIVRLQHRNLVRLFGCCVEMDEKLLVYEYMENRSLYSILFDEAKKPMLDWNRRYNIICGTARGLLYLHHDSRLRIIHRDLKASNVLLDSEMNPKISDFGMARLFGANQTEGNTLRVVGTYGYMSPEYAMDGTFSVKSDVFSFGVLALEIITGKKNRGFYYSNDDMNLLGHAWRHWRDGSALELVDSSIGDSYSPSEVLRCVHVGLLCVQERAEDRPTMSSVMLMLSSESSLMPQPRNPGFSLGKNPAEIDSSSSKQDESWSVNQVTVTLLDAR 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1508g00009 840 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 783 - -
Vium1508g00009 840 ProSiteProfiles PAN/Apple domain profile. 338 418 IPR003609 -
Vium1508g00009 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 144 - -
Vium1508g00009 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 597 800 - -
Vium1508g00009 840 Pfam Protein tyrosine and serine/threonine kinase 524 789 IPR001245 GO:0004672|GO:0006468
Vium1508g00009 840 SUPERFAMILY Protein kinase-like (PK-like) 499 792 IPR011009 -
Vium1508g00009 840 CDD B_lectin 34 147 IPR001480 -
Vium1508g00009 840 Pfam Domain of unknown function (DUF3403) 794 840 IPR021820 GO:0004674
Vium1508g00009 840 ProSiteProfiles Protein kinase domain profile. 521 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00009 840 Gene3D Transferase(Phosphotransferase) domain 1 597 801 - -
Vium1508g00009 840 SMART ntp_6 338 417 IPR003609 -
Vium1508g00009 840 ProSiteProfiles Bulb-type lectin domain profile. 22 141 IPR001480 -
Vium1508g00009 840 ProSitePatterns Protein kinases ATP-binding region signature. 527 549 IPR017441 GO:0005524
Vium1508g00009 840 CDD PAN_AP_plant 334 418 - -
Vium1508g00009 840 Gene3D Hepatocyte Growth Factor 336 415 - -
Vium1508g00009 840 MobiDBLite consensus disorder prediction 813 829 - -
Vium1508g00009 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Vium1508g00009 840 Gene3D Phosphorylase Kinase; domain 1 495 596 - -
Vium1508g00009 840 SMART serkin_6 521 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00009 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 487 596 - -
Vium1508g00009 840 CDD STKc_IRAK 527 792 - -
Vium1508g00009 840 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 213 IPR036426 -
Vium1508g00009 840 Pfam S-locus glycoprotein domain 206 317 IPR000858 GO:0048544
Vium1508g00009 840 SMART blect_4 28 147 IPR001480 -
Vium1508g00009 840 Gene3D - 17 144 IPR036426 -
Vium1508g00009 840 Pfam D-mannose binding lectin 70 173 IPR001480 -
Vium1508g00009 840 PIRSF SRK 1 840 IPR024171 GO:0004674
Vium1508g00009 840 MobiDBLite consensus disorder prediction 797 829 - -
Vium1508g00009 840 Pfam PAN-like domain 338 403 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1508g00009 Vium-Chr1508 29691 34706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1508g00009 509 840 Receptor kinase-like Gene Family AT4G11530 58.754 9.89e-135 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1508g00009 PK_Tyr_Ser-Thr 6.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1508g00009 - - gmx:100797331 1407.12