Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1508g00008 ATGACCAAGACGAGAGTGAGATGGAACAAACTTGATATCATTATGTTTGCTTATGCTTGTATATCAATCCTTCAGAATACGTCTTGTGCAGACGATGCGTTGACTCCAACATCTTCCATTGCAGATGGCCAAGAACTCATTTCTCCTGGACAGAATTTTTCTCTTGGATTCTTCACTCCAGGAGCATCAAAGAGCCGCTACATAGGGATATGGTACAAGAATATTACCCCGCAAACAATAGTTTGGGTAGCAAACAGAGATATCCCACTTAACGACTCCAGAGGAAATTTAACCATTGCTGCTGATGGTAATATTGTACTTTTTGATGGAGCAGGTAACAGAATATGGTTTACAAGTTCATCAAGCTCAATCGAAGAACCAATTGCAAAGCTGTTGGATTCTGGAAACTTTGTGTTGATGGATGGCAAGAAGCATGATTCTAAAGGTTACATATGGCAGAGCTTTGATAATCCAACAGACACAATGTTACCTGGGTTGATGTTGGGTTGGGATAAGAACTTAGGTATGAATAGATATTTGACTTCTTGGAAGAGTGCTAATGACCCCTCTCCTGGAAACTTTACCTTCAGGTTTGACCAGATAGAATTTCCTGAGTTGGTAATCCGCCAGGGAACGAACATCAGATTCAGAAGTGGAATTTGGGATGGCATCCGTTTTAATTCAGATGATTGGTTGTCCTTTATGGGAATTACAGCCTTCAAGCCACAACTTTCAGTAAATAGCACTGTGGCAGTGTATTGGGATGAACCTGGAGATAGATTGTCAAGATATGTGATGAAGGATGATGGACTCCTTCAAAGATATATCTGGGACAACAAAAATTTTAAGTGGACTCTGATGCATGAGGCAAGAAAGGACTTTTGTGATAACTACGGAGCATGTGGGGTGAACGGTATTTGCAATATGAAGGATATTCCTGCTTACTGCGATTGCTTGAAAGGGTTTACACCACATTCTCCGGAAGATTGGGATTCATTTAACTGGTCTGGTGGGTGCATCAGGAGAACACCCTTAAACTGCACACAAGCTGATAGGTTTCAGAAACTAAGTTGGGTTAAACTACCCATGTTGTTGCAATTTTGGACTAATGAAAGCATGAATCTTGAAGAATGCAAGGTGGAGTGCTTGAAGAACTGTTCCTGCACGGCGTACGCAAACTCAGCCTTGAATGAAGGGCCACATGGATGCTTGCTCTGGTTTGGGGACTTGACTGACATTCGGCAGCTTATAAATGAAGAGGGTGTACAACTTGATCTTTATTTAAGGTTAGCCGCTTCAGAAATAGAGTCCACTGCTAATGCAACTAAAAGGAAAAACATTGCACTGATTATTTCGGTACCTGTGGCACTGCTTCTTTGTTGTATCATTTTCTACCTTTCTAAGAAGTATATAAAACGGAGGACAAGCACTAGTTCGGTCACAGTCACAAGTCACAGAAATCAAAATGAAGATCAAGCATCACCTATTTTTGATATAGATACTATTCTGGCTGCTACAAACAATTTTTCCATTGAGAACAAGATCGGGGAAGGTGGTTTTGGCCCAGTATACAGGGGTAAATTGGCTAATGGACAAGAAATAGCCGTGAAAAGGCTATCAAAAACCTCAAAACAAGGCATCTCAGAGTTTATGAACGAAGTTGGATTGGTAGCCAAACTCCAACACCGTAATCTTGTGAGTGTTTTGGGAGGGTGCACTCAAAGAGAGGAAAGAATGCTGATCTATGAATACATGCCAAATAGTAGCTTGGACCACTTCATTTTTGATCCTATACAAGGAAAATTTTTGAACTGGAGGAAACGATATGAAATTATCATTGGGATTGCTCGAGGACTACTTTATCTCCACCAAGATTCAAAACTAACCATCATTCATAGGGATCTAAAAACTAGTAACATTCTACTAGACAGCCAATTGAACCCCAAAATTTCGGATTTTGGTGTGGCCCGCATAGTTGAAGGAGATCATTCTTCAATAACAACAGAAGAGATTGCTGGGACAATTGGTTACATGCCTCATGAGTATGCAGTAAACGGGATTCTTTCCCTGAAGTCTGATGTATATAGCTTCGGAGTTATAGTGTTAGAGATACTAAGCGGGATCAGAAGTAGTAACTACAAAGTCAAGCATCCAGATCATGATCACAATCTGATGGGGCAGGCATGGACATTATGGAAAGATGGACGAGCTGTGGGATTTATGGATGTTAATTTAGACCTTACAGTGGTTCCATCAGAATTACTAAGGTGTCTGCAAGTTGGTCTCTTGTGTGTTCAAAAGTTACCTGAAGATAGACCAACTATGTCTTCTGTTGTTTTTATGTTGAGCAATGAAAGCATTGTTCTTCCCCAACCAAAGAAAACTGGTTTCTTTGAAGAAGATTCAGAGTATCATCATGCGTACAGCGAGAACGAGAGTTTTAGTAACAATGCTATGACTATAACTCTATTAGAAGCTCGAAGTTAG 2487 0.4041 MTKTRVRWNKLDIIMFAYACISILQNTSCADDALTPTSSIADGQELISPGQNFSLGFFTPGASKSRYIGIWYKNITPQTIVWVANRDIPLNDSRGNLTIAADGNIVLFDGAGNRIWFTSSSSSIEEPIAKLLDSGNFVLMDGKKHDSKGYIWQSFDNPTDTMLPGLMLGWDKNLGMNRYLTSWKSANDPSPGNFTFRFDQIEFPELVIRQGTNIRFRSGIWDGIRFNSDDWLSFMGITAFKPQLSVNSTVAVYWDEPGDRLSRYVMKDDGLLQRYIWDNKNFKWTLMHEARKDFCDNYGACGVNGICNMKDIPAYCDCLKGFTPHSPEDWDSFNWSGGCIRRTPLNCTQADRFQKLSWVKLPMLLQFWTNESMNLEECKVECLKNCSCTAYANSALNEGPHGCLLWFGDLTDIRQLINEEGVQLDLYLRLAASEIESTANATKRKNIALIISVPVALLLCCIIFYLSKKYIKRRTSTSSVTVTSHRNQNEDQASPIFDIDTILAATNNFSIENKIGEGGFGPVYRGKLANGQEIAVKRLSKTSKQGISEFMNEVGLVAKLQHRNLVSVLGGCTQREERMLIYEYMPNSSLDHFIFDPIQGKFLNWRKRYEIIIGIARGLLYLHQDSKLTIIHRDLKTSNILLDSQLNPKISDFGVARIVEGDHSSITTEEIAGTIGYMPHEYAVNGILSLKSDVYSFGVIVLEILSGIRSSNYKVKHPDHDHNLMGQAWTLWKDGRAVGFMDVNLDLTVVPSELLRCLQVGLLCVQKLPEDRPTMSSVVFMLSNESIVLPQPKKTGFFEEDSEYHHAYSENESFSNNAMTITLLEARS 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1508g00008 828 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Vium1508g00008 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 155 - -
Vium1508g00008 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 189 IPR036426 -
Vium1508g00008 828 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Vium1508g00008 828 CDD PAN_AP_plant 343 431 - -
Vium1508g00008 828 ProSiteProfiles Protein kinase domain profile. 509 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00008 828 SUPERFAMILY Protein kinase-like (PK-like) 493 782 IPR011009 -
Vium1508g00008 828 SMART serkin_6 509 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00008 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Vium1508g00008 828 PIRSF SRK 7 827 IPR024171 GO:0004674
Vium1508g00008 828 Gene3D Transferase(Phosphotransferase) domain 1 585 792 - -
Vium1508g00008 828 CDD STKc_IRAK 515 782 - -
Vium1508g00008 828 Gene3D - 26 155 IPR036426 -
Vium1508g00008 828 ProSiteProfiles EGF-like domain profile. 291 328 IPR000742 -
Vium1508g00008 828 SMART ntp_6 348 430 IPR003609 -
Vium1508g00008 828 SMART blect_4 37 158 IPR001480 -
Vium1508g00008 828 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Vium1508g00008 828 Pfam PAN-like domain 347 413 IPR003609 -
Vium1508g00008 828 CDD B_lectin 37 158 IPR001480 -
Vium1508g00008 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 471 584 - -
Vium1508g00008 828 Gene3D Phosphorylase Kinase; domain 1 482 584 - -
Vium1508g00008 828 Pfam Protein tyrosine and serine/threonine kinase 510 779 IPR001245 GO:0004672|GO:0006468
Vium1508g00008 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 790 - -
Vium1508g00008 828 Pfam D-mannose binding lectin 79 184 IPR001480 -
Vium1508g00008 828 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1508g00008 Vium-Chr1508 25134 28834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1508g00008 447 813 Receptor kinase-like Gene Family AT4G23190 47.826 3.25e-111 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1508g00008 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1508g00008 - - vra:106774971 1637.85