Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1508g00006 ATGGAGAAAACCAAGTTCACCCTTTTATTTCTTGTTACTTGTTGCTATTTCCTGTCCTTGTTTCCTACGGCTTTGGAAGCAGAGGATGAAATAACTCCTCCACAAACCATCAGTGGCAACCAGACACTAGTCTCACCTTCTCAAAATTTTGAACTTGGTTTCTTCAGTCCTGGCAATTCCACTCACATTTATCTTGGAATATGGTACAAGCGTATCCCAAACAAGACAGTAATTTGGATTGCAAATAGAGACAAGCCACTAGTTAACTCTGGTGGCTCCTTGGCATTCAGTGATGATGGCAAGCTCATTCTTCTAAGCCACACAGGAGGTGTTGCATGGTCCTCAAACTCATCTGGACCTGCAAAAAATCCGGTGGCGCAGCTACTAGATTCCGGAAACTTTGTGTTGAAAGACTATGGAAATGAGAGATATTTGTGGGAGAGTTTTGATTACCCATCTGACACATTGATACCAGGAATGAAACTTGGTTGGAACTTCAAAACTGGCTTGAATCGACACTTGACTTCCTGGAAAACCACTTTTGATCCTTCTTCGGGAGAATACACCTACAGTGTGGATCCACGTGGCCTTCCTCAGCTTTTCCTTCACAGGGGAAACAAGCAGATTTTCAGAAGTGGACCATGGTATGGACAACAATTCAAAGGTGACCTGGCTCTCAGTGCAAATCCAGTTTTCAAACCCATATTTGTGTTTGATTCTGATGAAGTGTCTTACTCCTATGAGACCAAAGACACCATCATTTCAAGATTTGTGCTGAGTCAGTCTGGTTTGATTCAGCATTTTTCATGGAATGATCATCATTCGAGTTGGTTTTCTGAATTTTCAGTTCAAGGGGACAGTTGTGATGATTATGGTCTTTGTGGTGCTTACGGTTCTTGTTACATCAATAGCTCCCCTATCTGCAAGTGTTTGAAGGGTTTTGAACCGAAGCTTCCGCAGGAATGGGAAAGGTCTGTGTGGTCTGACGGATGTGTTGGAAAAGACACACAGGTTTGCAGCAACGGAGATGCATTTCAGCAGTTTACAGGAATGAAGCTTCCAGATGCCGCTGAGTTTCGTACAAACTACAGCATCAGCATTGATCACTGTGAGAAAGAATGCTCTAAGAACTGCTCTTGTGTTGGTTATGCAAAACTAGATATAAATGCAAGTGGCAAAGGTTGTATTGCATGGTTTGGGGATTTGTTGGATATAAGAGAGGTTTCTGTGAATGGACAAGATTTCTACCTGAGGGTTGCAGCTTCAGAAGTGGGTAAGAACATTAAAGGTTCAAATGCTGATGGAAGTAAAAGGAAGAAAATCATACTTTTTCCTGTGGCTGCATCTGTAACTTCAACAATTATTGTATCAGCATTTTGGTTGATAATTAAGAAATGCAGAAGAAATGGAGCCAAACAGACCGGTAGTCAGTTTAGTGTTGGCAGAGTCAGGAGTGAAAGGAATGAATTTGAACTTCCAATGTTTGAGATTGGCATGATTGAAGCCGCCACTGGGAATTTCTCTAATTACAACAAGATTGGAGAAGGTGGATTTGGTCCTGTATACAAAGGTCAACTTCCATCAGGACAGGAAGTAGCTGTGAAAAGGCTGTCAGAGAATTCTGGACAAGGCCCGCAGGAGTTCAAGAATGAGGTCATTTTGATCTCCCAACTTCAGCATCGAAATCTTGTCAAGCTTCTGGGTTGTTGCATTGATGGTGAAGATAAAATATTGATATATGAATACATGCCAAACCGAAGCTTGGACTCCTTATTATTTGATGAAACCAAGCGTTGTGTGCTCAGTTGGAAAACGAGGCTAGACATAATTATTGGCATTGCTCGGGGAATTCTCTACCTTCACAGAGATTCAAGACTGAGAATAATCCATAGAGACCTGAAAGCAAGCAATGTTCTGTTAGACGGGGAAATGAATCCAAAAATTTCTGACTTTGGAATGGCAAGAATGTTTGGTGGAGATCAAACTGAAGCAAAGACCAAGAGAGTAGTGGGAACCTATGGATATATGGCCCCGGAGTATGCAATAGATGGACACTTCTCTTTCAAATCAGATGTTTATAGCTTCGGGGTTTTACTCTTGGAAGTGTTGAGCGGAAAGAAAAACAAAGGATTTTTTCACCCAGATCACAAACTGAATCTCCTAGGCCATGCATGGAAAGTATGGAATGAAGAGAGGGCATTGGAGCTGATGGATCCATTGCTTGAGGGTGAGTTTTCGACATGTGAAGCTCTAAGGTGTATTAAAGTGGGTCTGTCATGCGTTCAACAGCTTCCAGAAGATAGGCCAACAATGTCATCAGTGGTTTTGATGTTGGACAGTGAGAATGTGTTGATCCCCCAACCGGGAAGGCCAGGAATATATTCCGAGAGGTTTTTCTCTCAGTCAAATTCATCATCACACGCTGCTTCCAATCACACAACTGTTACTTCGCTTGAGGGTCGTTGA 2466 0.4221 MEKTKFTLLFLVTCCYFLSLFPTALEAEDEITPPQTISGNQTLVSPSQNFELGFFSPGNSTHIYLGIWYKRIPNKTVIWIANRDKPLVNSGGSLAFSDDGKLILLSHTGGVAWSSNSSGPAKNPVAQLLDSGNFVLKDYGNERYLWESFDYPSDTLIPGMKLGWNFKTGLNRHLTSWKTTFDPSSGEYTYSVDPRGLPQLFLHRGNKQIFRSGPWYGQQFKGDLALSANPVFKPIFVFDSDEVSYSYETKDTIISRFVLSQSGLIQHFSWNDHHSSWFSEFSVQGDSCDDYGLCGAYGSCYINSSPICKCLKGFEPKLPQEWERSVWSDGCVGKDTQVCSNGDAFQQFTGMKLPDAAEFRTNYSISIDHCEKECSKNCSCVGYAKLDINASGKGCIAWFGDLLDIREVSVNGQDFYLRVAASEVGKNIKGSNADGSKRKKIILFPVAASVTSTIIVSAFWLIIKKCRRNGAKQTGSQFSVGRVRSERNEFELPMFEIGMIEAATGNFSNYNKIGEGGFGPVYKGQLPSGQEVAVKRLSENSGQGPQEFKNEVILISQLQHRNLVKLLGCCIDGEDKILIYEYMPNRSLDSLLFDETKRCVLSWKTRLDIIIGIARGILYLHRDSRLRIIHRDLKASNVLLDGEMNPKISDFGMARMFGGDQTEAKTKRVVGTYGYMAPEYAIDGHFSFKSDVYSFGVLLLEVLSGKKNKGFFHPDHKLNLLGHAWKVWNEERALELMDPLLEGEFSTCEALRCIKVGLSCVQQLPEDRPTMSSVVLMLDSENVLIPQPGRPGIYSERFFSQSNSSSHAASNHTTVTSLEGR 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1508g00006 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 786 - -
Vium1508g00006 821 CDD PAN_AP_plant 339 420 - -
Vium1508g00006 821 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Vium1508g00006 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 769 - -
Vium1508g00006 821 Pfam Protein tyrosine and serine/threonine kinase 510 776 IPR001245 GO:0004672|GO:0006468
Vium1508g00006 821 Gene3D Transferase(Phosphotransferase) domain 1 583 784 - -
Vium1508g00006 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 582 - -
Vium1508g00006 821 ProSiteProfiles Protein kinase domain profile. 507 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00006 821 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Vium1508g00006 821 SMART ntp_6 340 419 IPR003609 -
Vium1508g00006 821 Pfam D-mannose binding lectin 76 178 IPR001480 -
Vium1508g00006 821 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Vium1508g00006 821 SMART serkin_6 507 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00006 821 CDD STKc_IRAK 513 779 - -
Vium1508g00006 821 SUPERFAMILY Protein kinase-like (PK-like) 489 778 IPR011009 -
Vium1508g00006 821 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Vium1508g00006 821 CDD B_lectin 35 152 IPR001480 -
Vium1508g00006 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 149 - -
Vium1508g00006 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 183 IPR036426 -
Vium1508g00006 821 Pfam PAN-like domain 339 405 IPR003609 -
Vium1508g00006 821 SMART blect_4 34 152 IPR001480 -
Vium1508g00006 821 Gene3D Phosphorylase Kinase; domain 1 470 582 - -
Vium1508g00006 821 Gene3D Hepatocyte Growth Factor 335 417 - -
Vium1508g00006 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Vium1508g00006 821 Gene3D - 23 149 IPR036426 -
Vium1508g00006 821 PIRSF SRK 1 821 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1508g00006 Vium-Chr1508 18509 22722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1508g00006 427 816 Receptor kinase-like Gene Family AT4G05200 50.636 3.43e-127 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1508g00006 PK_Tyr_Ser-Thr 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1508g00006 - - gmx:100804024 1452.96