Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1508g00002 ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATTCGACAAGAAGTGTGTTCCCTCTTATCTCATCAACATGTTCCGTGGCAGCAGCTGATGCAGGAAACTACAGTACTTGGCAAAGCACTGATTTCGTGGATTTGAAGGGAACGAGGTCTTGCGCAGAGGACATTAATAACTTTATATCTTCTGATAATTCTCTGAGTTTTCTTGATGTTGAGAAGCCCCAGCTGAGGGACTCGGCTGGTGAAACTGGAAGCATCCTCACCGATTCCACCTTACAAATGATAGGTTTTGGCATGTCATCTTCAGCTTCACCGAATTGGAATCAATCTTTATTAGGGAGCGATTTTCATTCTGTGCTTCAAGGAGAAACAGGCATGGATGGCGATCTACCAAAGAATTTCTCATCTGCTGGTGGCCAAGGTTCCACCGTTGATGCTTTCAAGTCAATGAACCAAGAATTTTCCTTGGATCAGCAAAGCCTGAATTCCGTTGTTACGAGCACCGGATCATTATCTGGTGGTTTTCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACCTTGATACAAGGCTTATACGACCCTGAGCCTCAACCACAGCCACAGAACTCACTTTTCACCAACCCCCCCATGTCCTATTCTTCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAATCTCTTCACTTCTCAAGCCCTCAACGCCAAAACAGCAGCTCAGTGGACTGCACTTTTCCAACGACACTTCTTTCTGGAATGGTTCCGCCGAAGCACTTCATGACATAAGAGCAGGTGTTTTTGCTTCCTCACAGGCGCAATATCAAACGCCAAAATTTGAAGAGAAATCCAACAGCTCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCGCCAGACGCAATCTCATCTGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTAAGAAAGGAAAAGCTAGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTGTTGAGCACTCCATATATTAAAAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGAGTCAGAAGGGCGAAAAGAAGATCTGAGAAGCCGAGGGCTTTGTTTAGTACCGATTTCGAGCACGTTCCCGGTGGCTAACGAGAGCAGTGTTGATTTCTGGACGCCAACATTCGGAGGTGCAGTGATTGGCAGGTAG 1365 0.4535 MAEEFQAAICGESWWNINSTRSVFPLISSTCSVAAADAGNYSTWQSTDFVDLKGTRSCAEDINNFISSDNSLSFLDVEKPQLRDSAGETGSILTDSTLQMIGFGMSSSASPNWNQSLLGSDFHSVLQGETGMDGDLPKNFSSAGGQGSTVDAFKSMNQEFSLDQQSLNSVVTSTGSLSGGFPVVSASYGYPSTLIQGLYDPEPQPQPQNSLFTNPPMSYSSSTANYGTCSNELSPTWSKISSLLKPSTPKQQLSGLHFSNDTSFWNGSAEALHDIRAGVFASSQAQYQTPKFEEKSNSSNTLLNKLKREESPDAISSAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYIKNGAPIQHQQDCDNLKESEGRKEDLRSRGLCLVPISSTFPVANESSVDFWTPTFGGAVIGR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1508g00002 454 CDD bHLH_AtbHLH_like 338 389 IPR045239 -
Vium1508g00002 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 398 IPR036638 GO:0046983
Vium1508g00002 454 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 173 433 - -
Vium1508g00002 454 MobiDBLite consensus disorder prediction 306 330 - -
Vium1508g00002 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 381 IPR011598 GO:0046983
Vium1508g00002 454 FunFam Transcription factor bHLH123 family 342 404 - -
Vium1508g00002 454 Gene3D - 342 396 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1508g00002 Vium-Chr1508 1863 5148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1508g00002 1 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 39.270 9.71e-69 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1508g00002 - - gmx:100805087 712.99