LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1508g00001	ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATTCGACAAGAAGTGTGTTCCCTCTTATCTCATCAACATGTTCCGTGGCAGCAGCTGATGCAGGAAACTACAGTACTTGGCAAAGCACTGATTTCGTGGATTTGAAGGGAACGAGGTCTTGCGCAGAGGACATTAATAACTTTATATCTTCTGATAATTCTCTGAGTTTTCTTGATGTTGAGAAGCCCCAGCTGAGGGACTCGGCTGGTGAAACTGGAAGCATCCTCACCGATTCCACCTTACAAATGATAGGTTTTGGCATGTCATCTTCAGCTTCACCGAATTGGAATCAATCTTTATTAGGGAGCGATTTTCATTCTGTGCTTCAAGGAGAAACAGGCATGGATGGCGATCTACCAAAGAATTTCTCATCTGCTGGTGGCCAAGGTTCCACCGTTGATGCTTTCAAGTCAATGAACCAAGAATTTTCCTTGGATCAGCAAAGCCTGAATTCCGTTGTTACGAGCACCGGATCATTATCTGGTGGTTTTCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACCTTGATACAAGGCTTATACGACCCTGAGCCTCAACCACAGCCACAGAACTCACTTTTCACCAACCCCCCCATGTCCTATTCTTCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAATCTCTTCACTTCTCAAGCCCTCAACGCCAAAACAGCAGCTCAGTGGACTGCACTTTTCCAACGACACTTCTTTCTGGAATGGTTCCGCCGAAGCACTTCATGACATAAGAGCAGGTGTTTTTGCTTCCTCACAGGCGCAATATCAAACGCCAAAATTTGAAGAGAAATCCAACAGCTCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCGCCAGACGCAATCTCATCTGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTAAGAAAGGAAAAGCTAGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTGTTGAGCACTCCATATATTAAAAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGAGTCAGAAGGGCGAAAAGAAGATCTGAGAAGCCGAGGGCTTTGTTTAGTACCGATTTCGAGCACGTTCCCGGTGGCTAACGAGAGCAGTGTTGATTTCTGGACGCCAACATTCGGAGGTGCAGTGATTGGCAGGTAG	1359	0.4533	MAEEFQAAICGESWWNINSTRSVFPLISSTCSVAAADAGNYSTWQSTDFVDLKGTRSCAEDINNFISSDNSLSFLDVEKPQLRDSAGETGSILTDSTLQMIGFGMSSSASPNWNQSLLGSDFHSVLQGETGMDGDLPKNFSSAGGQGSTVDAFKSMNQEFSLDQQSLNSVVTSTGSLSGGFPVVSASYGYPSTLIQGLYDPEPQPQPQNSLFTNPPMSYSSSTANYGTCSNELSPTWSKISSLLKPSTPKQQLSGLHFSNDTSFWNGSAEALHDIRAGVFASSQAQYQTPKFEEKSNSSNTLLNKLKREESPDAISSAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVLSTPYIKNGAPIQHQQDCDNLKESEGRKEDLRSRGLCLVPISSTFPVANESSVDFWTPTFGGAVIGR	452

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1508g00001	452	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	342	387	IPR036638	GO:0046983
	Vium1508g00001	452	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	173	431	-	-
	Vium1508g00001	452	MobiDBLite	consensus disorder prediction	306	330	-	-
	Vium1508g00001	452	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	332	381	IPR011598	GO:0046983
	Vium1508g00001	452	CDD	bHLH_AtbHLH_like	338	385	IPR045239	-
	Vium1508g00001	452	Gene3D	-	342	393	IPR036638	GO:0046983
	Vium1508g00001	452	FunFam	Transcription factor bHLH123 family	342	402	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1508g00001	Vium-Chr1508	1862	5148	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1508g00001	1	447	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G61660	39.056	4.34e-66	215

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1508g00001	-		-	gmx:100805087	704.901

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