Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1508g00001 ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATTCGACAAGAAGTGTGTTCCCTCTTATCTCATCAACATGTTCCGTGGCAGCAGCTGATGCAGGAAACTACAGTACTTGGCAAAGCACTGATTTCGTGGATTTGAAGGGAACGAGGTCTTGCGCAGAGGACATTAATAACTTTATATCTTCTGATAATTCTCTGAGTTTTCTTGATGTTGAGAAGCCCCAGCTGAGGGACTCGGCTGGTGAAACTGGAAGCATCCTCACCGATTCCACCTTACAAATGATAGGTTTTGGCATGTCATCTTCAGCTTCACCGAATTGGAATCAATCTTTATTAGGGAGCGATTTTCATTCTGTGCTTCAAGGAGAAACAGGCATGGATGGCGATCTACCAAAGAATTTCTCATCTGCTGGTGGCCAAGGTTCCACCGTTGATGCTTTCAAGTCAATGAACCAAGAATTTTCCTTGGATCAGCAAAGCCTGAATTCCGTTGTTACGAGCACCGGATCATTATCTGGTGGTTTTCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACCTTGATACAAGGCTTATACGACCCTGAGCCTCAACCACAGCCACAGAACTCACTTTTCACCAACCCCCCCATGTCCTATTCTTCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAATCTCTTCACTTCTCAAGCCCTCAACGCCAAAACAGCAGCTCAGTGGACTGCACTTTTCCAACGACACTTCTTTCTGGAATGGTTCCGCCGAAGCACTTCATGACATAAGAGCAGGTGTTTTTGCTTCCTCACAGGCGCAATATCAAACGCCAAAATTTGAAGAGAAATCCAACAGCTCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCGCCAGACGCAATCTCATCTGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTAAGAAAGGAAAAGCTAGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTGTTGAGCACTCCATATATTAAAAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGAGTCAGAAGGGCGAAAAGAAGATCTGAGAAGCCGAGGGCTTTGTTTAGTACCGATTTCGAGCACGTTCCCGGTGGCTAACGAGAGCAGTGTTGATTTCTGGACGCCAACATTCGGAGGTGCAGTGATTGGCAGGTAG 1359 0.4533 MAEEFQAAICGESWWNINSTRSVFPLISSTCSVAAADAGNYSTWQSTDFVDLKGTRSCAEDINNFISSDNSLSFLDVEKPQLRDSAGETGSILTDSTLQMIGFGMSSSASPNWNQSLLGSDFHSVLQGETGMDGDLPKNFSSAGGQGSTVDAFKSMNQEFSLDQQSLNSVVTSTGSLSGGFPVVSASYGYPSTLIQGLYDPEPQPQPQNSLFTNPPMSYSSSTANYGTCSNELSPTWSKISSLLKPSTPKQQLSGLHFSNDTSFWNGSAEALHDIRAGVFASSQAQYQTPKFEEKSNSSNTLLNKLKREESPDAISSAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVLSTPYIKNGAPIQHQQDCDNLKESEGRKEDLRSRGLCLVPISSTFPVANESSVDFWTPTFGGAVIGR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1508g00001 452 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 387 IPR036638 GO:0046983
Vium1508g00001 452 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 173 431 - -
Vium1508g00001 452 MobiDBLite consensus disorder prediction 306 330 - -
Vium1508g00001 452 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 381 IPR011598 GO:0046983
Vium1508g00001 452 CDD bHLH_AtbHLH_like 338 385 IPR045239 -
Vium1508g00001 452 Gene3D - 342 393 IPR036638 GO:0046983
Vium1508g00001 452 FunFam Transcription factor bHLH123 family 342 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1508g00001 Vium-Chr1508 1862 5148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1508g00001 1 447 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 39.056 4.34e-66 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1508g00001 - - gmx:100805087 704.901