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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vium1508g00001
ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATTCGACAAGAAGTGTGTTCCCTCTTATCTCATCAACATGTTCCGTGGCAGCAGCTGATGCAGGAAACTACAGTACTTGGCAAAGCACTGATTTCGTGGATTTGAAGGGAACGAGGTCTTGCGCAGAGGACATTAATAACTTTATATCTTCTGATAATTCTCTGAGTTTTCTTGATGTTGAGAAGCCCCAGCTGAGGGACTCGGCTGGTGAAACTGGAAGCATCCTCACCGATTCCACCTTACAAATGATAGGTTTTGGCATGTCATCTTCAGCTTCACCGAATTGGAATCAATCTTTATTAGGGAGCGATTTTCATTCTGTGCTTCAAGGAGAAACAGGCATGGATGGCGATCTACCAAAGAATTTCTCATCTGCTGGTGGCCAAGGTTCCACCGTTGATGCTTTCAAGTCAATGAACCAAGAATTTTCCTTGGATCAGCAAAGCCTGAATTCCGTTGTTACGAGCACCGGATCATTATCTGGTGGTTTTCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACCTTGATACAAGGCTTATACGACCCTGAGCCTCAACCACAGCCACAGAACTCACTTTTCACCAACCCCCCCATGTCCTATTCTTCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAATCTCTTCACTTCTCAAGCCCTCAACGCCAAAACAGCAGCTCAGTGGACTGCACTTTTCCAACGACACTTCTTTCTGGAATGGTTCCGCCGAAGCACTTCATGACATAAGAGCAGGTGTTTTTGCTTCCTCACAGGCGCAATATCAAACGCCAAAATTTGAAGAGAAATCCAACAGCTCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCGCCAGACGCAATCTCATCTGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTAAGAAAGGAAAAGCTAGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTGTTGAGCACTCCATATATTAAAAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGAGTCAGAAGGGCGAAAAGAAGATCTGAGAAGCCGAGGGCTTTGTTTAGTACCGATTTCGAGCACGTTCCCGGTGGCTAACGAGAGCAGTGTTGATTTCTGGACGCCAACATTCGGAGGTGCAGTGATTGGCAGGTAG
1359
0.4533
MAEEFQAAICGESWWNINSTRSVFPLISSTCSVAAADAGNYSTWQSTDFVDLKGTRSCAEDINNFISSDNSLSFLDVEKPQLRDSAGETGSILTDSTLQMIGFGMSSSASPNWNQSLLGSDFHSVLQGETGMDGDLPKNFSSAGGQGSTVDAFKSMNQEFSLDQQSLNSVVTSTGSLSGGFPVVSASYGYPSTLIQGLYDPEPQPQPQNSLFTNPPMSYSSSTANYGTCSNELSPTWSKISSLLKPSTPKQQLSGLHFSNDTSFWNGSAEALHDIRAGVFASSQAQYQTPKFEEKSNSSNTLLNKLKREESPDAISSAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVLSTPYIKNGAPIQHQQDCDNLKESEGRKEDLRSRGLCLVPISSTFPVANESSVDFWTPTFGGAVIGR
452
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vium1508g00001
452
SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain
342
387
IPR036638
GO:0046983
Vium1508g00001
452
PANTHER
TRANSCRIPTION FACTOR BHLH83-RELATED
173
431
-
-
Vium1508g00001
452
MobiDBLite
consensus disorder prediction
306
330
-
-
Vium1508g00001
452
ProSiteProfiles
Myc-type, basic helix-loop-helix (bHLH) domain profile.
332
381
IPR011598
GO:0046983
Vium1508g00001
452
CDD
bHLH_AtbHLH_like
338
385
IPR045239
-
Vium1508g00001
452
Gene3D
-
342
393
IPR036638
GO:0046983
Vium1508g00001
452
FunFam
Transcription factor bHLH123 family
342
402
-
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Vium1508g00001
Vium-Chr1508
1862
5148
Tandem
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vium1508g00001
1
447
Basic Helix-Loop-Helix Transcription Factor Gene Family
AT1G61660
39.056
4.34e-66
215
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vium1508g00001
-
-
gmx:100805087
704.901
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