Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15073g00002 ATGGGAATTTGCTATTCCGCCACCAAAGTCAGCGGCTCCAATGGCAACGCCGTCACCGACAAGAAAAATCGCAAGCGAACCGCGAAGCCCGAGTCTCCGACGGCGGCGGCCAATCCCGAACGGCGCAAGGCAAGTGCGCGGCAGGTGCCATGCGGAAAGCGCACTGATTTCGGTTACGACAAAAATTTCGATACGCGATACACGCTGGGCAAATTGCTGGGACACGGCCAATTCGGTTACACCTACGAAGGAATCGACAAAGCTAATGCCGATCGTGTCGCCGTTAAGAGGATCGATAAGAGTAAGATGGTTCAGCCTATAGCCGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGCGCTCACTGGCCACGAGAATGTGGTTCAGTTCTATGATGCTTTTGAAGATGATTCTTACGTGTATATAGTTATGGAGTTATGCGAGGGCGGCGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATACTGAAAAAGATGCAGCAGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTGCACCGGGACATGAAACCAGAGAATTTTCTTCTGAAATCAACCAAAGAAGATTCACCTTTAAAGGCCACAGATTTTGGTTTGTCGGATTTCATTAAACCTGGAAAGAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTACTAAAACGCAAGTCTGGCCCACAATCAGATGTGTGGAGCATTGGTGTTATTACATACATATTGCTAAGTGGGAGACGTCCATTCTGGGATAAGACCGAGGATGGTATTTTTAAGGAGGTTTTACGGAAAAAGCCTGATTTCCAACGGAAACCATGGCCAACTATAAGTAATGCCGCAAAAGATTTTGTGAAAAAATTACTGGTAAAGGATCCTCGGGCAAGGTTAACTGCTGCTCAAGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAAGCATCGGAGATTCCTATTGATATATCCGTTCTTAGCAACATGCGGGAATTTGTGAAATATAGTCGATTGAAACAATTTGCACTCAGGGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATCTAAAAGATCAATTTGATGCTATAGATGTGGACAAAAATGGTTCTATTAGTTTGGAAGAGATGAGACAGGCTCTTGCGAAAGATCTTCCTTGGAAGTTGAAAGAACCACGTGTACTAGAGATATTGCAAGCGATAGACAGCAACACTGATGGGCTAGTGGATTTTAGTGAGTTTGTGGCTGCTACATTACATGTGCATCAGTTGGAGGACGACTCTGGCAAGTGGCAGCAGCGGTCACAGGCTGCTTTTGAGAAATTTGACTTAGATAAAGATGGCTATATTACTCCAGATGAACTTAAAATGCATACAGGCTTGAGAGGCTCCATTGATCCTTTGCTGGAGGAAGCTGATATCGACAAAGACGGAAAAATCAGCCTATCAGAGTTCCGTAGGCTTCTAAGGACTGCGAGCATGGGTTCTCAAAAGGTTTCAAGCCCAGCTGTGTATAAACGGAGAGTCTAA 1584 0.4514 MGICYSATKVSGSNGNAVTDKKNRKRTAKPESPTAAANPERRKASARQVPCGKRTDFGYDKNFDTRYTLGKLLGHGQFGYTYEGIDKANADRVAVKRIDKSKMVQPIAVEDVKREVKILKALTGHENVVQFYDAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLLKSTKEDSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLSGRRPFWDKTEDGIFKEVLRKKPDFQRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLSNMREFVKYSRLKQFALRALASTLNEEELADLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKEPRVLEILQAIDSNTDGLVDFSEFVAATLHVHQLEDDSGKWQQRSQAAFEKFDLDKDGYITPDELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRRLLRTASMGSQKVSSPAVYKRRV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15073g00002 527 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Vium15073g00002 527 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Vium15073g00002 527 PANTHER SERINE/THREONINE-PROTEIN KINASE 48 500 - -
Vium15073g00002 527 SMART efh_1 452 480 IPR002048 GO:0005509
Vium15073g00002 527 SMART efh_1 482 510 IPR002048 GO:0005509
Vium15073g00002 527 SMART efh_1 374 402 IPR002048 GO:0005509
Vium15073g00002 527 SMART efh_1 411 439 IPR002048 GO:0005509
Vium15073g00002 527 Gene3D Phosphorylase Kinase; domain 1 60 152 - -
Vium15073g00002 527 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Vium15073g00002 527 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vium15073g00002 527 Gene3D - 368 437 - -
Vium15073g00002 527 SMART serkin_6 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15073g00002 527 FunFam CDPK-related kinase 1 60 152 - -
Vium15073g00002 527 Pfam Protein kinase domain 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15073g00002 527 FunFam Calcium-dependent protein kinase 28 368 437 - -
Vium15073g00002 527 FunFam calcium-dependent protein kinase 28-like 153 346 - -
Vium15073g00002 527 Gene3D - 349 506 - -
Vium15073g00002 527 Gene3D Transferase(Phosphotransferase) domain 1 153 348 - -
Vium15073g00002 527 ProSiteProfiles Protein kinase domain profile. 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15073g00002 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Vium15073g00002 527 CDD STKc_CAMK 66 326 - -
Vium15073g00002 527 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Vium15073g00002 527 CDD EFh 454 508 IPR002048 GO:0005509
Vium15073g00002 527 SUPERFAMILY Protein kinase-like (PK-like) 66 341 IPR011009 -
Vium15073g00002 527 MobiDBLite consensus disorder prediction 1 49 - -
Vium15073g00002 527 ProSiteProfiles EF-hand calcium-binding domain profile. 486 513 IPR002048 GO:0005509
Vium15073g00002 527 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Vium15073g00002 527 Pfam EF-hand domain pair 374 436 IPR002048 GO:0005509
Vium15073g00002 527 Pfam EF-hand domain pair 454 507 IPR002048 GO:0005509
Vium15073g00002 527 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Vium15073g00002 527 SUPERFAMILY EF-hand 356 509 IPR011992 -
Vium15073g00002 527 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15073g00002 Vium-Chr15073 492 9612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15073g00002 1 523 EF-hand Containing Proteins AT2G17890 74.382 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium15073g00002 Pkinase 1.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15073g00002 K13412 - gmx:100798941 955.281