Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15073g00001 ATGGCAACGCCGTCACCGACAAGAAAAATCGCAAGCGAACCGCGAAGCCCGAGTCTCCGACGGCGGCGGCCAATCCCGAACGGCGCAAGGCAAGTGCGCGGCAGGTGCCATGCGGAAAGCGCACTGATTTCGGTTACGACAAAAATTTCGATACGCGATACACGCTGGGCAAATTGCTGGGACACGGCCAATTCGGTTACACCTACGAAGGAATCGACAAAGCTAATGCCGATCGTGTCGCCGTTAAGAGGATCGATAAGAATGGTTCAGCCTATAGCCGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGCGCTCACTGGCCACGAGAATGTGGTTCAGTTCTATGATGCTTTTGAAGATGATTCTTACGTGTATATAGTTATGGAGTTATGCGAGGGCGGCGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATACTGAAAAAGATGCAGCAGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTGCACCGGGACATGAAACCAGAGAATTTTCTTCTGAAATCAACCAAAGAAGATTCACCTTTAAAGGCCACAGATTTTGGTTTGTCGGATTTCATTAAACCTGGAAAGAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTACTAAAACGCAAGTCTGGCCCACAATCAGATGTGTGGAGCATTGGTGTTATTACATACATATTGCTAAGTGGGAGACGTCCATTCTGGGATAAGACCGAGGATGGTATTTTTAAGGAGGTTTTACGGAAAAAGCCTGATTTCCAACGGAAACCATGGCCAACTATAAGTAATGCCGCAAAAGATTTTGTGAAAAAATTACTGGTAAAGGATCCTCGGGCAAGGTTAACTGCTGCTCAAGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAAGCATCGGAGATTCCTATTGATATATCCGTTCTTAGCAACATGCGGGAATTTGTGAAATATAGTCGATTGAAACAATTTGCACTCAGGGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATCTAAAAGATCAATTTGATGCTATAGATGTGGACAAAAATGGTTCTATTAGTTTGGAAGAGATGAGACAGGCTCTTGCGAAAGATCTTCCTTGGAAGTTGAAAGAACCACGTGTACTAGAGATATTGCAAGCGATAGACAGCAACACTGATGGGCTAGTGGATTTTAGTGAGTTTGTGGCTGCTACATTACATGTGCATCAGTTGGAGGACGACTCTGGCAAGTGGCAGCAGCGGTCACAGGCTGCTTTTGAGAAATTTGACTTAGATAAAGATGGCTATATTACTCCAGATGAACTTAAAATGCATACAGGCTTGAGAGGCTCCATTGATCCTTTGCTGGAGGAAGCTGATATCGACAAAGACGGAAAAATCAGCCTATCAGAGTTCCGTAGGCTTCTAAGGACTGCGAGCATGGGTTCTCAAAAGGTTTCAAGCCCAGCTGTGTATAAACGGAGAGTCTAA 1539 0.4496 MATPSPTRKIASEPRSPSLRRRRPIPNGARQVRGRCHAESALISVTTKISIRDTRWANCWDTANSVTPTKESTKLMPIVSPLRGSIRMVQPIAVEDVKREVKILKALTGHENVVQFYDAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLLKSTKEDSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLSGRRPFWDKTEDGIFKEVLRKKPDFQRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLSNMREFVKYSRLKQFALRALASTLNEEELADLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKEPRVLEILQAIDSNTDGLVDFSEFVAATLHVHQLEDDSGKWQQRSQAAFEKFDLDKDGYITPDELKMHTGLRGSIDPLLEEADIDKDGKISLSEFRRLLRTASMGSQKVSSPAVYKRRV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15073g00001 512 Gene3D - 353 422 - -
Vium15073g00001 512 ProSiteProfiles EF-hand calcium-binding domain profile. 355 390 IPR002048 GO:0005509
Vium15073g00001 512 SUPERFAMILY Protein kinase-like (PK-like) 92 333 IPR011009 -
Vium15073g00001 512 CDD EFh 439 493 IPR002048 GO:0005509
Vium15073g00001 512 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Vium15073g00001 512 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Vium15073g00001 512 ProSiteProfiles Protein kinase domain profile. 19 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15073g00001 512 Pfam Protein kinase domain 95 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15073g00001 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Vium15073g00001 512 Gene3D Phosphorylase Kinase; domain 1 70 137 - -
Vium15073g00001 512 ProSiteProfiles EF-hand calcium-binding domain profile. 471 498 IPR002048 GO:0005509
Vium15073g00001 512 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Vium15073g00001 512 MobiDBLite consensus disorder prediction 1 31 - -
Vium15073g00001 512 ProSitePatterns EF-hand calcium-binding domain. 368 380 IPR018247 -
Vium15073g00001 512 FunFam calcium-dependent protein kinase 28-like 138 331 - -
Vium15073g00001 512 Gene3D - 334 491 - -
Vium15073g00001 512 SUPERFAMILY EF-hand 341 494 IPR011992 -
Vium15073g00001 512 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Vium15073g00001 512 CDD STKc_CAMK 87 311 - -
Vium15073g00001 512 ProSitePatterns EF-hand calcium-binding domain. 476 488 IPR018247 -
Vium15073g00001 512 Pfam EF-hand domain pair 439 492 IPR002048 GO:0005509
Vium15073g00001 512 Pfam EF-hand domain pair 359 421 IPR002048 GO:0005509
Vium15073g00001 512 SMART efh_1 359 387 IPR002048 GO:0005509
Vium15073g00001 512 SMART efh_1 396 424 IPR002048 GO:0005509
Vium15073g00001 512 SMART efh_1 467 495 IPR002048 GO:0005509
Vium15073g00001 512 SMART efh_1 437 465 IPR002048 GO:0005509
Vium15073g00001 512 PANTHER SERINE/THREONINE-PROTEIN KINASE 89 485 - -
Vium15073g00001 512 Gene3D Transferase(Phosphotransferase) domain 1 138 333 - -
Vium15073g00001 512 FunFam Calcium-dependent protein kinase 28 353 422 - -
Vium15073g00001 512 SMART serkin_6 59 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15073g00001 Vium-Chr15073 492 9612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15073g00001 87 508 EF-hand Containing Proteins AT2G17890 85.816 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium15073g00001 Pkinase 1.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15073g00001 K13412 - gmx:100798941 792.727