Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15066g00001 ATGGGTAACATAGGAAGCAGCGGCTCCAATAGCCGTCGGAGACACGGCGGTGGCGGCAGCGGGAGGCGGATTCACCCGCCGCCGCCTCATCCGCCGGTGATTCCTCCGCCGGAAGTCACGGCGAACGGATTCGCGTACCCCCCCGCCGCCACGCCATATCACAACTACCCCGGGTACTACCCGCCGCCGACCACCATGCCGGCGCCGTTGCCGGCTCCTTACGACCACCACCACCGCCCGTCGGTGGACCCGATGTGGGGGAGGTACCCGGCTGCGCCGGCTCCGACGCCGACGCCGTATGTGGAGCACCAGAAGGCTGTTACTATAAAAAACGATGTAAACATCAAGAAGGAGACTCTTAGGATTGAGCCTGATGAAGAGAATCCTGACCGTTTCCTCGTGACGTTTACGTTTGATGCCACTGTTTCGGGAAGCATCACGATACTTTTCTTTGCAAAAGAAGGGGAAGGTTGCATCCTAACCCCAATGAAGGAAAATGATCTTCCACCCATGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAGGTTTAAACAACCAGCTGGAACTGGTATTGATTTTTCGATATTTGAGGAGTCTGAGTTATTGAATGTGGGGGACGACGATATTTATCCTGTTGCAATTAAAGCAGATGCATCCTCTGGTGACCCTGATGAATCAAAATCAAATGAAACTTCATCATATGGTAACACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTTCAGGTGAAGGTTGTTAAACAGATTTTATGGGTAAATGAAATGAGGTATGAACTGCAGGAGATATATGGTATTGGTAATTCAGTGGAGAGTGACTTGGATGGTAATGACCCAGGAAAAGAGTGTGTTATATGTTTGTCAGAGCCTCGTGACACAACCGTCCTTCCGTGTCGCCACATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAAACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTGGGGCCTGAAACTGAGGAATGA 1053 0.5024 MGNIGSSGSNSRRRHGGGGSGRRIHPPPPHPPVIPPPEVTANGFAYPPAATPYHNYPGYYPPPTTMPAPLPAPYDHHHRPSVDPMWGRYPAAPAPTPTPYVEHQKAVTIKNDVNIKKETLRIEPDEENPDRFLVTFTFDATVSGSITILFFAKEGEGCILTPMKENDLPPMTVNFQQGLGQRFKQPAGTGIDFSIFEESELLNVGDDDIYPVAIKADASSGDPDESKSNETSSYGNTNSQITQAVFEKEKGEFQVKVVKQILWVNEMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPETEE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15066g00001 350 MobiDBLite consensus disorder prediction 24 42 - -
Vium15066g00001 350 PANTHER MAHOGUNIN 1 343 IPR045194 GO:0061630
Vium15066g00001 350 MobiDBLite consensus disorder prediction 1 43 - -
Vium15066g00001 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 343 IPR013083 -
Vium15066g00001 350 MobiDBLite consensus disorder prediction 216 236 - -
Vium15066g00001 350 SUPERFAMILY RING/U-box 293 338 - -
Vium15066g00001 350 FunFam probable E3 ubiquitin-protein ligase LOG2 278 343 - -
Vium15066g00001 350 Pfam Zinc finger, C3HC4 type (RING finger) 292 338 - -
Vium15066g00001 350 SMART ring_2 294 332 IPR001841 -
Vium15066g00001 350 ProSiteProfiles Zinc finger RING-type profile. 294 333 IPR001841 -
Vium15066g00001 350 CDD mRING-HC-C3HC5_MGRN1-like 292 333 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15066g00001 Vium-Chr15066 9200 13372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15066g00001 87 313 C3H Transcription Factor Family AT3G09770 64.530 1.14e-100 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15066g00001 - - gmx:100789032 556.599