Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15060g00001 ATGGAGCTCACCGAAGAACAACAACGGCAAGTTGAAGCGAACCGTGCAGCGGCGATCGCAAAACGCAAAGCGTTCTTAGAATCCAGAGCGCAACGAGAAGAACAATCTCATGGTGAAGGAGAAAAGACTACGAACCCCAACCCATGGCACCTTTTCAAGTGCCAAAAGTTCCCTAAACCTCAACCCCCGAAGTTCCTCGCCAGACTCGAAATATGCTCCGCCGATTCCTTCTCCATCACACCCATTCAGCTTCCTCCGTTCCCCTTCCCCGGTCACCAGCATTGCCTCTCCACTCTAAACTCCATTCTCTCACATGTGATGCTTTCGCACTTCACGCAGACCACCGGAGGGGTGGAGGTATGCGTGTTCAAGCTCACGGAGTACCACGCTGTGGTCAGACAGTTGAAGGTGGAGGTGGAGGCGCTTCAGGTGGAGGAGATCCCCTGGGCGACGTTCAACGTGGTGGAGCGTCTCTCGCTTTCGGTAGCTGCTGGGCGGTGGACGCCGGTGCGGCCGGAGCACTTGGCCGACGAGGAGGTAGAGCGCCTGATCGCGAAACTCCCAAGGTCTCTCCTGGACGTATTGCTCCCTTTCCAGCATGACGGACTGCGGTTCGCGTTGAGAAGAGGCGCTCGGTGTCTCATTGCCGATGATATGGGCCTCGGGAAAACACTCCAGGCTATTGCTATTGCGGGGTGTTTTCTGGATGAAGGTTCCATACTCGTGGTTTGTCCTGCTGTGTTGCGGTTCACGTGGGCGGAGGAATTGGAGCGCTGGCTTCCTTTCTGTTTGCCGGCTGATATACATCTCGTTTTTGGCCATCAAGACAACCCTATATATTTAACAAGAAAACCTAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGAAAGAACATGCTTGAACTTCAATGGGCTCTTTTGATTGTTGATGAATCACATCATGTGCGATGTACGAAGAAAACAGAACCAGGCGAGATACAGGCTGTTCTTGATGTGGCTTCAAAAGTCCATCGTATAATTCTGCTATCAGGGACACCTTCTCTGTCAAGACCGTACGACATATATAACCAGATAAATATGCTATGGCCTGGTTTGCTGGGGAAGACTAAATACGAATTTGCAAAAACTTATTGCGATTTAAAATATATCAAAGGAAATCAAGGAAAATATTTTGCGGATTATTCAAAGGGTGTGCGCTTGGAAGAGTTAAATGTGTTACTGAAGCAAACTGTTATGGTAGGATCTCCTCCCATATTAATCATCTAA 1275 0.4925 MELTEEQQRQVEANRAAAIAKRKAFLESRAQREEQSHGEGEKTTNPNPWHLFKCQKFPKPQPPKFLARLEICSADSFSITPIQLPPFPFPGHQHCLSTLNSILSHVMLSHFTQTTGGVEVCVFKLTEYHAVVRQLKVEVEALQVEEIPWATFNVVERLSLSVAAGRWTPVRPEHLADEEVERLIAKLPRSLLDVLLPFQHDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFLDEGSILVVCPAVLRFTWAEELERWLPFCLPADIHLVFGHQDNPIYLTRKPRVVVISYTMLHRLRKNMLELQWALLIVDESHHVRCTKKTEPGEIQAVLDVASKVHRIILLSGTPSLSRPYDIYNQINMLWPGLLGKTKYEFAKTYCDLKYIKGNQGKYFADYSKGVRLEELNVLLKQTVMVGSPPILII 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15060g00001 424 MobiDBLite consensus disorder prediction 25 40 - -
Vium15060g00001 424 SMART ultradead3 191 386 IPR014001 -
Vium15060g00001 424 Coils Coil 125 145 - -
Vium15060g00001 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 388 IPR027417 -
Vium15060g00001 424 Gene3D - 170 415 IPR038718 -
Vium15060g00001 424 Pfam SNF2-related domain 212 378 IPR000330 GO:0005524|GO:0140658
Vium15060g00001 424 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 367 IPR014001 -
Vium15060g00001 424 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 416 - -
Vium15060g00001 424 FunFam SNF2 DNA repair protein, putative 169 417 - -
Vium15060g00001 424 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15060g00001 Vium-Chr15060 101 6718 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium15060g00001 SNF2_N 1.9e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15060g00001 K25861 - vum:124822897 842.032