Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15052g00002 ATGGCGACGGCGGCGGAGCCAGAAGCGAAGACCTACTGGTGCCACGAATGCGATATGAGTGTGTCCCTCACGCTCCTTCCCTCGCCTCTCCTCTGTCCCCACTGCCACACCTCCTTCCTTGAACTGATGGACTCTCCCTTCTCCCAAAACGACGCCGAATCACCCCTCTTCGACGTCGTTTTCCAGGACGCGCTCTTACTCCTCTCCCCCAAGCCCCTCCCCGCCAAACCCCGCCCTCTTCCCTCCGTCAACGTCACACCCTCGCTCCTTTCCGCGCTCGACCCCAACGGCGTCGTTTTCTGCGCCGTTTGCAAAGACCAAATTGTCCTCGACGCCGAGGCCAAACAATTACCCTGCAAACACCTCTACCACGCCGATTGCATCACGCCGTGGCTCGACCTCCACGCGTCGTGCCCGTTGTGTAGGCTCCGCCTTGAGGAAGAGGCGGCACAGGAGGAGGAAGACGAAGGTGATGGCGTGGTGACGGAGATCCGGAGGGAGCTGATCGCGAGGCTCACGGAGTTTACGGAGGAGGATTTCTACGGGCTGAGGACCACACTCAGCCACATTGCCTCGCGCCACGCGCTCATCGAAGAGAACGAGAACCTCCTTCAAATTGGCGAACCTCGAGGTGCCCAAGCGCCTTTGCTATAA 654 0.604 MATAAEPEAKTYWCHECDMSVSLTLLPSPLLCPHCHTSFLELMDSPFSQNDAESPLFDVVFQDALLLLSPKPLPAKPRPLPSVNVTPSLLSALDPNGVVFCAVCKDQIVLDAEAKQLPCKHLYHADCITPWLDLHASCPLCRLRLEEEAAQEEEDEGDGVVTEIRRELIARLTEFTEEDFYGLRTTLSHIASRHALIEENENLLQIGEPRGAQAPLL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15052g00002 217 SMART ring_2 101 141 IPR001841 -
Vium15052g00002 217 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Vium15052g00002 217 Pfam Ring finger domain 101 142 IPR001841 -
Vium15052g00002 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 160 IPR013083 -
Vium15052g00002 217 SUPERFAMILY RING/U-box 100 147 - -
Vium15052g00002 217 ProSiteProfiles Zinc finger RING-type profile. 101 142 IPR001841 -
Vium15052g00002 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 72 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15052g00002 Vium-Chr15052 4937 8605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15052g00002 5 63 C3H Transcription Factor Family AT3G60080 47.692 6.36e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15052g00002 K11982 - gmx:100775530 300.441