Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1504g00001 ATGGAGAAGAGTAAAAAATTGCAGAAGAGCTACTTTGATGTGTTGGGTCTGTGCTGCTCCTCTGAAGTACCACTCATTGAAAACATCTTAAAGCCACTTGAAGGAATCAAAGAGGTTTCTGTCATAGTTCCTTCACGAACTGTCATTGTTCTGCATGACACTCTTGTCATTTCGCAACTTCAAATCGTTAAGGCATTGAATCGAGCGAGATTAGAAGCTAATATCAGAGTACATGGAGATCAAAATCATGGAAAAAGATGGCCAAGCCCTTATTCAATTGTTTCGGGTGTTTTACTTTTGGTTTCTTTTCTGAAATTTGTGTACCCTCCTTTCAAGTACGTAGCACTTGGTGCAGTTGCTGCTGGTATTTACCCTATCGTCCTAAAGGCCTTTGTCTCCATTCGTAATGTTAGGGTTGACATTAGCATTCTCATGATCATAGCAGTTATTGGGACAATTGCTATGGATGATTATTTGGAAGCTGGCACCATCGTTTTCCTCTTCTCAATTGCAGAATGGCTAGAATCAAGGGCAAGCCACAAGGCAACTGCAGCAATGTCGTCTTTGATGAACATAGCCCCTCAAAAAGCAGTCATAGCTGAAACGGGAGAGGTTGTGGATGCTGATGAGGTGAAAGTAAACACCATTTTAGCTGTTAAAGCAGGTGAGGTGATACCCATTGATGGAGTTGTTCTAGATGGAACCTGTGAAGTTGACGAGAAAACTTTGACTGGGGAATCATTCCCTGTGGCAAAACAAAAGGATTCTATTGTATGGGCTGGCACCATCAATTTGAATGGTTATATCAGTCTGAAAACTACTGCACTGGCTGAAGATTGTGTGGTGGCTAAAATGTCAAAACTTGTGGAAGAAGCTCAAAACAGCAAAACAAACGTTCAGACATTGATTGATAAGTTTGTCAAGTTTTATACTCCAGCCGTTGTAATCATATCAACCCTTGTAGCAGTGATTCCACTTGCCTTGAAATCACGTAGAGAGAACTACTGGTTTCACTCAGCGTTGGTTGTTTTAGTGAGTGCATGCCCATGTGCACTCATCCTTTCAACTCCAGTTGCAACCTTTTGTGCTTACACCAGAGCAGCCACATCAGGTCTTCTCATCAAAGGGTGTCATCATCTTGAAACACTTGCAAAAATCAAGGTCATGGCCTTTGACAAAACAGGTACCATAACGAAGGGTGATTTTGTGGTCACAGAGTTTCAATCTCTTTCAGATGACTTGGATTTCAACACATTGCTTTACTGGGTGTCAAGTGTAGAGAGCAAGTCAAGCCATCCACTGGCATCTGCCGTTGTTGATTATGGAAGGTCTCTCTCCGTTGAACCAGAGCCAGAAAAGGTGACAGAATTTGAAAACTTTCCTGGGGAAGGAATTAGTGGAAAAATGGATGACAGAGTTATTTACATCGGAAATAAAAAAATTGCCGCAAGAGCCGGGTCTGAAACAGTTCCAATATTACAAAGAGAAAATGTAAGAGGAAAAACCACTGGATACATATACTTAGGAGCAACCCCAGTTGGATTTTTCTCTCTTTCAGATGTTTGCAGGTTAGGTGTTGAGGAAGCAATTGGGCAGTTGAAGTTAATGGGAATCAAAACAGCCATGCTCACTGGAGACAGTGAATCTGCTGCAATGCAAGCACAGGAGCAGCTGGGACATTCTCTGGAATTAGTCCATGCAGAACTGTTGCCAGAGGACAAGGTGAAAATCATCTCAGAATTTAAGAAAGAAGGTCCGACAGCCATGATCGGTGATGGTATAAACGATGCGCCGGCATTAGCTTCCGCTGATATTGGAATCTCAATGGGCATTTCAGGTTCTGCACTTGCAAGTGAGACCGGCAATATAATTCTTATGTCAAATGACATTAAGAAGATACCTGAAGCCATTAAACTTGCAAGAAAAACACGATGGAAAGTGCTTCAGAATATTATTTTGTCGATCACAACCAAGGCTGCAATTATTGGTTTGGCCATTGGTGGTTATCCATATGTTTGGGCAGCAGTGGTTGCTGATGTTGGAACGTGTCTAGTGGTTATCTTCAACAGCATGTTACTTCTTCCAAGAGGCCATAAACATGGAGGAAAATCTTGCAGATCTTCAACTAAGTCTCATAACCACAAAAGTGGGTGTGGTGGCACTCATGACCATGATCATGCTCACCACCAACATCAACATTGTCATGATCACCATCACCATCAACACAAGCTTGAGCATGATCACCACCATCAACATAAGCATGAGCATGATCACCACCATCAACATAAGCATGAGCATGATCACCACCATCAACATAAGCATAAGCATGAGCATGAGCATGAGCATGAGCATGAGCATGAGCATGAGCATGAGCATGATCTTCATCAACATCAACATGGTCATGAGCATGATCACCACCAGCATCAACATGAGTATGATCACCATTACCACACCGATAACCACTGCCACCCTATCCCTGTTTGTGAAAACCTGAAAGACCATAAATGCAGAAGTGTTTTACATTGCAATCAAGACATGAATCATAACAAGTCAGTTTGTCATCCAGAAAATGAGAAGAATGAGACAGGTGAAATATCCGTTGGCATCATCGTTGAACGTGTTGAATCAGCCCCAATGAAAGGTTGTTCAAGTTTGACAGAAAAAGAGAAAGGTTCCTGCTGTGAAGGCTGCTCAGACACGTGCGAGAATTTGGTTATTGTGTGTGACTGTGAGAGTTCAAAAGAGGGAGAAGACAGTGCATGTTGCAGAAATGAATGTTCTTCAAAAGCATGCAACGAATCTTCAATTATTCATGGTTGTGTTGGTTTGGATAAGAGAGAATATGGTGGATGTTGCAAGAGCTACATGAAGGAATGCTGTGGCAAACTTGGACACTCAAGAACTGGTTTTGTTGGAGGTTTGTCAGAAATTATGACAGAATAG 2943 0.42 MEKSKKLQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVLHDTLVISQLQIVKALNRARLEANIRVHGDQNHGKRWPSPYSIVSGVLLLVSFLKFVYPPFKYVALGAVAAGIYPIVLKAFVSIRNVRVDISILMIIAVIGTIAMDDYLEAGTIVFLFSIAEWLESRASHKATAAMSSLMNIAPQKAVIAETGEVVDADEVKVNTILAVKAGEVIPIDGVVLDGTCEVDEKTLTGESFPVAKQKDSIVWAGTINLNGYISLKTTALAEDCVVAKMSKLVEEAQNSKTNVQTLIDKFVKFYTPAVVIISTLVAVIPLALKSRRENYWFHSALVVLVSACPCALILSTPVATFCAYTRAATSGLLIKGCHHLETLAKIKVMAFDKTGTITKGDFVVTEFQSLSDDLDFNTLLYWVSSVESKSSHPLASAVVDYGRSLSVEPEPEKVTEFENFPGEGISGKMDDRVIYIGNKKIAARAGSETVPILQRENVRGKTTGYIYLGATPVGFFSLSDVCRLGVEEAIGQLKLMGIKTAMLTGDSESAAMQAQEQLGHSLELVHAELLPEDKVKIISEFKKEGPTAMIGDGINDAPALASADIGISMGISGSALASETGNIILMSNDIKKIPEAIKLARKTRWKVLQNIILSITTKAAIIGLAIGGYPYVWAAVVADVGTCLVVIFNSMLLLPRGHKHGGKSCRSSTKSHNHKSGCGGTHDHDHAHHQHQHCHDHHHHQHKLEHDHHHQHKHEHDHHHQHKHEHDHHHQHKHKHEHEHEHEHEHEHEHEHDLHQHQHGHEHDHHQHQHEYDHHYHTDNHCHPIPVCENLKDHKCRSVLHCNQDMNHNKSVCHPENEKNETGEISVGIIVERVESAPMKGCSSLTEKEKGSCCEGCSDTCENLVIVCDCESSKEGEDSACCRNECSSKACNESSIIHGCVGLDKREYGGCCKSYMKECCGKLGHSRTGFVGGLSEIMTE 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1504g00001 980 MobiDBLite consensus disorder prediction 778 812 - -
Vium1504g00001 980 Gene3D - 401 522 IPR023299 GO:0000166
Vium1504g00001 980 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 1 694 - -
Vium1504g00001 980 FunFam Putative cadmium/zinc-transporting ATPase 3 401 522 - -
Vium1504g00001 980 NCBIfam cadmium family heavy metal-translocating P-type ATPase 141 694 - -
Vium1504g00001 980 PRINTS P-type cation-transporting ATPase superfamily signature 239 253 - -
Vium1504g00001 980 PRINTS P-type cation-transporting ATPase superfamily signature 390 404 - -
Vium1504g00001 980 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Vium1504g00001 980 PRINTS P-type cation-transporting ATPase superfamily signature 536 546 - -
Vium1504g00001 980 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Vium1504g00001 980 Pfam E1-E2 ATPase 200 368 - -
Vium1504g00001 980 NCBIfam HAD-IC family P-type ATPase 164 671 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium1504g00001 980 NCBIfam heavy metal translocating P-type ATPase 142 693 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vium1504g00001 980 MobiDBLite consensus disorder prediction 731 777 - -
Vium1504g00001 980 Gene3D - 178 293 - -
Vium1504g00001 980 ProSiteProfiles Heavy-metal-associated domain profile. 8 74 IPR006121 GO:0046872
Vium1504g00001 980 Coils Coil 285 305 - -
Vium1504g00001 980 MobiDBLite consensus disorder prediction 716 730 - -
Vium1504g00001 980 FunFam Putative cadmium/zinc-transporting ATPase 3 4 77 - -
Vium1504g00001 980 PRINTS Copper-transporting ATPase signature 625 639 - -
Vium1504g00001 980 PRINTS Copper-transporting ATPase signature 181 199 - -
Vium1504g00001 980 PRINTS Copper-transporting ATPase signature 312 326 - -
Vium1504g00001 980 PRINTS Copper-transporting ATPase signature 568 585 - -
Vium1504g00001 980 SFLD p-type atpase 373 643 IPR044492 -
Vium1504g00001 980 SUPERFAMILY HMA, heavy metal-associated domain 6 74 IPR036163 GO:0046872
Vium1504g00001 980 SUPERFAMILY HAD-like 389 691 IPR036412 -
Vium1504g00001 980 SUPERFAMILY Calcium ATPase, transmembrane domain M 142 662 IPR023298 -
Vium1504g00001 980 SFLD Haloacid Dehalogenase 373 643 - -
Vium1504g00001 980 FunFam Copper-transporting ATPase 1, putative 179 293 - -
Vium1504g00001 980 MobiDBLite consensus disorder prediction 698 812 - -
Vium1504g00001 980 Pfam haloacid dehalogenase-like hydrolase 386 604 - -
Vium1504g00001 980 SUPERFAMILY Calcium ATPase, transduction domain A 204 289 IPR008250 -
Vium1504g00001 980 ProSitePatterns Hypothetical cof family signature 2. 590 612 - -
Vium1504g00001 980 CDD P-type_ATPase_HM 93 692 - -
Vium1504g00001 980 Gene3D - 381 641 IPR023214 -
Vium1504g00001 980 Gene3D - 3 77 - -
Vium1504g00001 980 ProSitePatterns E1-E2 ATPases phosphorylation site. 392 398 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1504g00001 Vium-Chr1504 24301 33387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1504g00001 4 826 Primary Pumps ATPases AT4G30110 58.265 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1504g00001 K01534 - gmx:100817567 1233.01