Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15046g00004 ATGAGCAGTTTAAGGCCTGAGTCTCATGTGGCACAGCAAATTCGGCGCGAAAAATTGAGAATCCAAAACAGTTCTCAACCTCTGCACGAATTTCCCAACAATCTTGAACCGTTATCGTTACAGCCGGGGTTTAATAACTTTGACCTTCTTCATGTTAGGAATGTTAGAAACGCTAACATGCTCGACGAACCAGTTGTTTATCCACCAGAAATGCCAAACTTCTCCACTTTGAACCCCTTGTCTACTCCAAAGAACGCTTTGGAGTATCATCAAGAAATAGGTGCAGCTGAAGCGAGTAACAGGCTGATGATGAATCAGTATGGTTCATTTTCCCATTCCATGCCCTCTATTCATTCTTCCCACAAGGAACAGTGTGAACTTCGTAATTTGGGAAATTGGAGGAACAGTGCTCCCCAACAAGGATCTGATTGGTTTATAAATTATCCAAGTAATGCCAATTCTTTTTTGTCTTCTGAGCTCAGCAACGTGTCTTCTTACAACGAACTAATGGATGCACAGTGTAGCAATGCATCTGATGAAATCAGTGGTAGAGAAATTCAAAAGCAATTAGGTGGACTGCATAATCCTCCTCCTCCTCCTCCACTGTATCAAAATGCTTTGCAAGATATTGTGAAGTCTGCCTCTATCAGCGCCCACACTGGGCAAGACATGACTTCCCTAATGCAGCAAAATGACCACAGCATTTGGGTGGGCAATAGTACTGAAGTTGAGCTTCAACATCCGAGTTATGGAAATCAGCCAAATCCGTTGCGTTTTGGATGGACAAATCGAGCAATAGATAACATCCCGAGTGATTCACTTCCTCAGAGCTTATCCTTGTCACTTTCATCGAACGCACAACCCAAGCCTTCTGTTTCTCAACATGAGCAAGGGTCTACATCCGATGATCCTCGTTGTTTGAAGTATATGACGCCGTCTATTGTCTCTAGAGATTTTGCGAAATCACTTCAAGACACGGTGGGAATGCCTTCGAAGAGTACTATAAGTTACCGAAGTGTGGGTCCCCTTGGCCCTTTTACAGGGTATGCTACTATTCTTAAGAGTTCAAGGTTCTTAAAGTCTGTCCAACAGTTGTTAGATGAGATTTTCTGTGTATCTGGTGCAAAGTTTGCGAAATCATATGATGTTTCAGAACGTGTTTCTCCAGAAGTTAGTGCTTCTACTTCTGCGGATACTGTTACTGTCAATAACACCGGATTTACTGCAAAAGGTAGGAACTCAGGTTCTTCATCAACTATGTTGTATAATGTGTCAAAGGAAAATTGTTCTGATTTGGGAGTTGGAAGTAGCTTTGGACTTTCTTCGCGGCCAGATTATCAACAGAAGAAAGCAAAACTGCTGTACATGCAAGAGGAGGTTACGAGGCAATGCAAGCAGTACCATCTACAAATGCAGACGGTTATTTCTTCGTTCGAGTCAGTGGCGGGTCTTAGTTCTGCTACTCCTTACGTCTCCATGGCTCTCAAGTCAGTATCAAAACACTTCAGATGTTTAAAAAATTCTATCTCAGATCAGCTGAAGCTTGTAAGCGAAGCCTTGGGAGAGGATGTGTCAATACCCTCTTGCAGTACTGGCAGTAAAGCTGACACTACTATGGCAAGGATAAGATGCAGCATGGACCAAAGTTTTCTAAAGAACAAATCTGGCAGAGGGAGTACTACGGATCTTCTTGATCCACAACAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACATGCTCGCTAGTCAAACAGGTCTATCACGGAATCAGGTATCAAATTGGTTCATAAATGCTCGAGTACGAGTATGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGCAACAGGCACCAGAGAGAAGAGTGGTAAACATGAGGGAACATCTTCTGGCCCTGAAGGTGGTGATAGCAGCCAACCTAGAGTGGATAAGCCTTTGAGAAATATTGGTATGAATTCAATACCTGAAAACAGATTTGAGGGCATGGAAATGGAATCAAGCAATGCTGAAGAAAGAGGGTTAAGTGAAGAAGAATGGAGTCAAGAGAAAAGATCTAAAATGGAATGCCAAATGACTTCAAACAATATGGATGGTACATTGATGGGTTTTATGCCATACCGACGCGGTGGCCTTGAGGTTGGTGGACTTGATTCTGTGTCACTAACGTTGGGTCTTAGACATGGCGTTGAAGGAGTACAACATCAACAACAATTGCAAGAGGAGCAGCTTCGACATCATCACCTCGGAGGGCACATGATCCGTGACTATGTGGGCTGA 2361 0.4333 MSSLRPESHVAQQIRREKLRIQNSSQPLHEFPNNLEPLSLQPGFNNFDLLHVRNVRNANMLDEPVVYPPEMPNFSTLNPLSTPKNALEYHQEIGAAEASNRLMMNQYGSFSHSMPSIHSSHKEQCELRNLGNWRNSAPQQGSDWFINYPSNANSFLSSELSNVSSYNELMDAQCSNASDEISGREIQKQLGGLHNPPPPPPLYQNALQDIVKSASISAHTGQDMTSLMQQNDHSIWVGNSTEVELQHPSYGNQPNPLRFGWTNRAIDNIPSDSLPQSLSLSLSSNAQPKPSVSQHEQGSTSDDPRCLKYMTPSIVSRDFAKSLQDTVGMPSKSTISYRSVGPLGPFTGYATILKSSRFLKSVQQLLDEIFCVSGAKFAKSYDVSERVSPEVSASTSADTVTVNNTGFTAKGRNSGSSSTMLYNVSKENCSDLGVGSSFGLSSRPDYQQKKAKLLYMQEEVTRQCKQYHLQMQTVISSFESVAGLSSATPYVSMALKSVSKHFRCLKNSISDQLKLVSEALGEDVSIPSCSTGSKADTTMARIRCSMDQSFLKNKSGRGSTTDLLDPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKATGTREKSGKHEGTSSGPEGGDSSQPRVDKPLRNIGMNSIPENRFEGMEMESSNAEERGLSEEEWSQEKRSKMECQMTSNNMDGTLMGFMPYRRGGLEVGGLDSVSLTLGLRHGVEGVQHQQQLQEEQLRHHHLGGHMIRDYVG 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15046g00004 786 Pfam Associated with HOX 352 510 IPR006563 -
Vium15046g00004 786 FunFam BEL1-like homeodomain protein 9 574 636 - -
Vium15046g00004 786 ProSiteProfiles 'Homeobox' domain profile. 568 631 IPR001356 GO:0003677
Vium15046g00004 786 SMART HOX_1 571 635 IPR001356 GO:0003677
Vium15046g00004 786 SUPERFAMILY Homeodomain-like 573 637 IPR009057 -
Vium15046g00004 786 MobiDBLite consensus disorder prediction 640 684 - -
Vium15046g00004 786 Pfam Homeobox KN domain 588 627 IPR008422 GO:0003677|GO:0006355
Vium15046g00004 786 MobiDBLite consensus disorder prediction 277 306 - -
Vium15046g00004 786 MobiDBLite consensus disorder prediction 640 655 - -
Vium15046g00004 786 Gene3D - 574 636 - -
Vium15046g00004 786 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 233 656 - -
Vium15046g00004 786 SMART prehox3 347 511 IPR006563 -
Vium15046g00004 786 CDD homeodomain 571 632 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15046g00004 Vium-Chr15046 23930 30641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15046g00004 275 641 Homeobox Transcription Factor Family AT5G02030 43.089 4.63e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium15046g00004 POX 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15046g00004 - - gmx:100790583 1156.35