Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1503g00005 ATGCAAAGATTGGTCATAATGGATCCACGTCTTTGTGGGTTTAATGGTCGCCCTAATGAAGTCCGGTTAGGAAATCAGAGATTTGAAAATGGTTTCTTTGATCAAAGTAGGGACTTTGGTTACCTTCAATCCAATCTAGTGCCTTCCAAGACGCCTTCTTCATCCTCGGTTTTGACTCATGAGGAACCTTCTCCGGAGGAATGTGAATTTTCTGATGCAATTTTGAGTTACATCAGTCAGATCCTTATGGAGGAAGACATGGAAGATAAGACATGTATGCTGCATGACTCTTTGGATCTTCAAATTGCTGAGAGATCATTCTATGAGGTGATAGGTGAAAAGTACCCTTCTTCGCTTTTAGGAAATCCAAGTCCTGTTGATCCAGGCGGTGGGGTTGGGGATCATAATTTCTCTGAAAATTATGGTACCTGTTCTTACAATGATGGTGATCTCAGTAGCATTTTTACTAATTTTCGTCAAAATTTGGGGGAACTCCCTAACCATAATTTACGAGGCAATAGCATTTCACAGTCATCTTGTAGCTCTTCAAATAGTGTGATAAGTAGTGTGGAAGGACCTGTGGACTCTCCAAGCAGTATTCTCCAGGTCCCTGATCTGAACAGTGAGAGTCAATCCATTTTGCAATTTCAGAAGGGTGTTGAGGAAGCTAGCAAGTTTCTTCCAAGTGGAAATGATCTCTTTGCTAATTTGGGTGTGGCTAATTTTTCAAAACTGGAGCCTAAAATGGGGTGCGATGAATTGTCAGTTAAGGTGGAGAAGGATGTGGGGGAGTCTTTTCTTGCTGGGTCCAAAGGAAGAAAACATCATCTCAGTGAAGAGGTGGATTTTGAAGAAAATAGAAGCAGCAAGCAAGCTGCAATTTTCTCCGAACCTACATTGCCATCATCTTCTATTGATGTAATCCTGCTTCATAGTTTAGGGGATGGTAAGAAGGTTTTCATGGCCCGTCGTGAGGCTTTGCAAACTAAGAATGACAAGATAGCACTGTCAAATGGTAAATCAAAGGCTTCCAACAGTGGTAAGGGACGTAGTAAGAAACAAAGTGGGAAAAAGGAAGTCATTGATTTGAGAACACTTTTGGTTCTTTGTGCACAAGCTGTTGCAGCAGATGACTATAGTGGCGCACATGAGTCTCTAAAGCGGATCAGGAAACACTCAAGCCCTTTTGGGGATGGAAATCAGAGGTTGGCCCATATCTTTGCTGATGGCCTTGAAGCGCGCTTGGCTGGGACTGGTAGCCAAATTTATAAAGGACTTGTGAGCAAAAGAACATCAGCTGCTGATTTTCTGAAGGCTTATCATCTGTATCTCGCTGCTTGCCCTTTTAGGAAGATGTCTAGTTTTATCTCTAATGTCACAATAAGGGAATCTTCCACAAATTCAGCGAGAGTCCATGTTATAGATTTTGGTATCCTTTATGGTTTCCAATGGCCTACTTTTATTCAGAGACTTTCATTAGCAGTTGGAGGACCACCTAAACTTCGAATTACAGGAATAGACTTCCCACAACCTGGTTTCAGGCCTGCTGAGAGAATTGTAGAAACTGGACGCCGCTTGGCAGCTTATGCTGAATCATTTAAGGTGCCATTTGAGTATAATGCTATAGCAAAAAAGTGGGAAACAGTTCAGCTTGAGGAACTGAAGATTGATAGGGAGGAATATCTTGTTGTCACCTGTTTTTATCGTGGTAAAAATGTGCTTGATGAATCTGTGCTCGTGGACAGTCCGAGGAACAAATTCCTCAGTTTGATAAGGAAGATCAACCCGGATTTATTCATTCATGGCATTACAAACGGAGCCTTTAATGCGCCTTTCTTTGTTACTCGATTCAGGGAGGCACTGTTTCACTACTCTTCACTTTTTGACATGCTTGAAACTATTGTGCCTCAAGAGGACTGGGAGAGGATGCTAATAGAGAAAGAGATTTTTGGCAGGGAAGCATTGAATGTCATAGCTTGTGAAGGGTGTGAGAGAGTAGAGAGGCCAGAGACATATAGGCAGTGGCAAGCCCGGATTCTTAGGGCTGGATTTTCGCAACAATCTTTTGAACATGCTTTAGTAAAGAGGGCAATAGAGAAAGTATCTACTAGCTACCACAAGGATTTTGTTATTGATGAAGATAGCCAGTGGTTGTTGCAAGGTTGGAAGGGGCGGATTGTTTATGCCCTTTCTTGTTGGAAACCAGCATGA 2211 0.422 MQRLVIMDPRLCGFNGRPNEVRLGNQRFENGFFDQSRDFGYLQSNLVPSKTPSSSSVLTHEEPSPEECEFSDAILSYISQILMEEDMEDKTCMLHDSLDLQIAERSFYEVIGEKYPSSLLGNPSPVDPGGGVGDHNFSENYGTCSYNDGDLSSIFTNFRQNLGELPNHNLRGNSISQSSCSSSNSVISSVEGPVDSPSSILQVPDLNSESQSILQFQKGVEEASKFLPSGNDLFANLGVANFSKLEPKMGCDELSVKVEKDVGESFLAGSKGRKHHLSEEVDFEENRSSKQAAIFSEPTLPSSSIDVILLHSLGDGKKVFMARREALQTKNDKIALSNGKSKASNSGKGRSKKQSGKKEVIDLRTLLVLCAQAVAADDYSGAHESLKRIRKHSSPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRTSAADFLKAYHLYLAACPFRKMSSFISNVTIRESSTNSARVHVIDFGILYGFQWPTFIQRLSLAVGGPPKLRITGIDFPQPGFRPAERIVETGRRLAAYAESFKVPFEYNAIAKKWETVQLEELKIDREEYLVVTCFYRGKNVLDESVLVDSPRNKFLSLIRKINPDLFIHGITNGAFNAPFFVTRFREALFHYSSLFDMLETIVPQEDWERMLIEKEIFGREALNVIACEGCERVERPETYRQWQARILRAGFSQQSFEHALVKRAIEKVSTSYHKDFVIDEDSQWLLQGWKGRIVYALSCWKPA 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1503g00005 736 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 292 727 IPR005202 -
Vium1503g00005 736 MobiDBLite consensus disorder prediction 331 350 - -
Vium1503g00005 736 MobiDBLite consensus disorder prediction 331 357 - -
Vium1503g00005 736 Pfam GRAS domain family 363 734 IPR005202 -
Vium1503g00005 736 ProSiteProfiles GRAS family profile. 354 734 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1503g00005 Vium-Chr1503 101206 104851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1503g00005 66 735 GRAS Transcription Factor Family AT2G37650 52.402 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium1503g00005 GRAS 5.7e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1503g00005 - - gmx:100801824 1248.42