Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15033g00003 ATGTATGGTGGCGCACACCACAGCAGATCTTTAAATTCTTCTCCTTCGAAGATCAATTTTCCGTTTCTTCATCCATCAAAAACCCTAACCACATTCTCTCTCACCTCACTCTCGTACTCTTCTCAATCTGTTACTCCCATGAGCTATCACATGAATAATGAAGATACACGCAGAGGTTTGAAAAGAAAGCCCCCATACATGGATCAAGGGCATGAACGGGGACCGTACAATATGAATTCTAGACCTTATGATAGGAACATGGTTCCTGATGGTTGGTTTGACTGCCCAGCACATGGACAAGAATTAGGACGCATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCAATGATAACATTCCACGTGAAAAATATACTCCTAAACAAGCGATTCATCAACAAAGAGTCTTAGGTCGGGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTATTATCCTCTATCAGATTGGACAAAAGAAGGAATTGCTCATGTCAAGATAAGATGCAAAGGAAGAGATGCTGTACCTGATGATCAATCTGTACAAAATTTCTGTGAGGAGGTTCAAGATTTTTGCTCCCAAAGAACAAATGAAAAGAAATATATACTTGTACATTGTACCCATGGGCATAATCGCACAGGTTATATGATTGTTCACTTTCTTGTGCGTACGAAATCTATGTCTGTTACCGAGGCGATAAATAAATTTGCTTTGGCACGTCACCCAGGAATTTACAAGCAGGACTATATTGACGCCCTGTACATGTTTTATCGTGAAAAGAAACCTGAAGATCTTGTTTGTCCTCAAACTCCTGAATGGAAGAGAACTTCGGATCCTGATTATCGGGGCCCAACTGTCCCGGCTGTGGACAATTATGGGCACATTCCAGAACAGGAGAATATAGTCAGAAATGAAGTATTGACAACCGATGATGTTTTGGGAGATCCAATTCCTCCAAATCAGCTAAGAGCGATGCAAGAAGTTTGTTATCAACTGCTCAAGTTGAACACAGGGGGAAGAGGACGATTGCAGTTTCCTGGATCACACCCTGTTTCTCTGAACAGGGACAACCTGCAACTCTTGAGGCAACGATATTACTATGCCACATGGAAAGCTGATGGGACACGCTATATGATGCTGATTACTTGTGATGAATGTTATTTGATTGACAGAAAATTTCTCTTCCACAGGATCAATATGCGATTTCCTTGCAGATATTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGTAGATGATTATTGACAGGGATCCACACACACATAAGCAAGAGAGAAGATACCTCATCTATGATTTGATGGCAATCAATCAGGTCTCTTTGACAGAGCTGCCGTTTTATGAAAGGTGGAGATTGCTGGAGAAAGAAGTGATTGAACCTCGTAACATGGAGCGTGAGGGCCTTTCAAAAAATACCGATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGAAGGAAGGGATTTTGGTTACTATCCACTGTATCAAAGCTCCTACATAAGTTCATTCCACAACTATCGCATTCATCAGACGGTCTTGTATTGCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTCTGTGAGGTGGGAGCTGGTGATCGTCCCATGCTTTTTCTGTTTGAACGTGGACGGAAGAAGTTCATGGAAGAGAATGTTATTTTTAAAGATGCATCAGACATTTCTTCCTATTCCGGAAAGATCATTGAATGCTACTGGGATTCCGGGGAGCATCATTGGGTCTGTATGCGGATAAGAATAGACAAAGCAACTCCGAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACTGAAGAAGTCTTATTGAATGAGATCAATAAGACAATTTGCCTACCCTTGTATGCAGACAGAATACAAAAGGATATCAAGGCTCATCAGCATATGGTCTCCTCAAGGCGCAACATATCACAAGATCATAATGGAAAAAGCTCAACAGAAACGGCTTTAACAGGACACTAA 2094 0.4121 MYGGAHHSRSLNSSPSKINFPFLHPSKTLTTFSLTSLSYSSQSVTPMSYHMNNEDTRRGLKRKPPYMDQGHERGPYNMNSRPYDRNMVPDGWFDCPAHGQELGRIIPSKVPLGESFNDNIPREKYTPKQAIHQQRVLGRELGLVIDLTNTTRYYPLSDWTKEGIAHVKIRCKGRDAVPDDQSVQNFCEEVQDFCSQRTNEKKYILVHCTHGHNRTGYMIVHFLVRTKSMSVTEAINKFALARHPGIYKQDYIDALYMFYREKKPEDLVCPQTPEWKRTSDPDYRGPTVPAVDNYGHIPEQENIVRNEVLTTDDVLGDPIPPNQLRAMQEVCYQLLKLNTGGRGRLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITCDECYLIDRKFLFHRINMRFPCRYSNGGTPERNHHYTLLDGXMIIDRDPHTHKQERRYLIYDLMAINQVSLTELPFYERWRLLEKEVIEPRNMEREGLSKNTDPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVLQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGDRPMLFLFERGRKKFMEENVIFKDASDISSYSGKIIECYWDSGEHHWVCMRIRIDKATPNDINTYRKVMRSIKDNITEEVLLNEINKTICLPLYADRIQKDIKAHQHMVSSRRNISQDHNGKSSTETALTGH 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15033g00003 697 Gene3D DNA ligase/mRNA capping enzyme 302 547 - -
Vium15033g00003 697 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Vium15033g00003 697 Gene3D - 548 654 IPR012340 -
Vium15033g00003 697 CDD RNA_5'-triphosphatase 91 257 - -
Vium15033g00003 697 Gene3D Protein tyrosine phosphatase superfamily 66 282 IPR029021 -
Vium15033g00003 697 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
Vium15033g00003 697 PIRSF mRNA_capping_HCE 76 684 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vium15033g00003 697 Pfam Dual specificity phosphatase, catalytic domain 140 260 IPR000340 GO:0008138|GO:0016311
Vium15033g00003 697 SMART dsp_5 116 261 IPR020422 GO:0006470|GO:0008138
Vium15033g00003 697 MobiDBLite consensus disorder prediction 674 697 - -
Vium15033g00003 697 MobiDBLite consensus disorder prediction 272 291 - -
Vium15033g00003 697 CDD Adenylation_mRNA_capping 322 550 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vium15033g00003 697 PANTHER MRNA-CAPPING ENZYME 83 660 - -
Vium15033g00003 697 MobiDBLite consensus disorder prediction 673 697 - -
Vium15033g00003 697 FunFam mRNA-capping enzyme isoform A 584 656 - -
Vium15033g00003 697 FunFam mRNA capping enzyme family protein 84 296 - -
Vium15033g00003 697 MobiDBLite consensus disorder prediction 48 81 - -
Vium15033g00003 697 Pfam mRNA capping enzyme, C-terminal domain 571 647 IPR013846 -
Vium15033g00003 697 SUPERFAMILY Nucleic acid-binding proteins 552 661 IPR012340 -
Vium15033g00003 697 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 327 550 - -
Vium15033g00003 697 Pfam mRNA capping enzyme, catalytic domain 351 549 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vium15033g00003 697 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 277 IPR029021 -
Vium15033g00003 697 MobiDBLite consensus disorder prediction 54 69 - -
Vium15033g00003 697 FunFam mRNA capping enzyme, putative 310 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15033g00003 Vium-Chr15033 22020 31881 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15033g00003 63 669 Protein tyrosine phosphatase (PTP) family AT3G09100 61.364 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15033g00003 - K13917 vra:106758011 1402.11