Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15033g00001 ATGACTATGTCAGTGATGTGTCGACCAACACATCAGGCTCTGAAAAACGTTCCTTCCGGTGGACAAAGCCAGATGATGAGGCCAAAAGAGAAGGTGGTGCTGGTCATGGGAGCAACGGGGAGCGGGAAAACCAGGTTGTCGGTGGACTTAGCAACATGTTTTCCCTCAGAAATCATAAACTCTGACAAAATGCAAGTGTACGAAGGGCTTGAGATTGTCACCAACAAGGCCACCAAAGAGGAGCAGCGTGGGGTCCCACATCACCTCCTGGGGACGCAGAACCCCGACACCGAGTTCACGGCCTCCGACTTCTGCGACGCCGCTTCACGCGCCATCGAGTCTATAACGCGCCGCGACAAGGTTCCGATAGTGGTGGGAGGATCCAACTCGTACATGGAGGCCCTGGTGGATAGGTTCGGGCCGCGGTTCGAGTGGTGCTTTCTGTGGGTCGACGTGTCCGTGCCAGTGCTCTATTCCTACGTGGGGCAGCGCGTGGACCACATGCTCCGATGTGGAATGGTGAACGAGTTGAGACCGTTCTTCAACGTGAACGGCGATTACACGCGTGGGATAAGGAAGGCAATTGGGGTTTCTGAATTCCACCCGTACTTCCGGCGGGAGACGACGGCAAGCGGTGAGACGAGGATGAGGCTGCTGCAGGAGGCGGTGAGGGACGTGAAGGGGAACACGTGCGACTTGGCACGCAAGCAACTTGGGAGAATCCACATGCTCCGAAGTGAGGGGTGGAAGATCCACCGCGTTTGCGCCACGCCCGTGTTTCAGAAACGTGGCCGCGACGCCAATGAGGCTTGGAACAACATGGTGGCGAAACCCTGTGCCTCCATTGTTTCTCAGTTTCTCTACAGTTCTGCCAATTCTGCTTCTGGGAGAGTCGCGCCTTCTATGCAACCAAACTAA 918 0.5621 MTMSVMCRPTHQALKNVPSGGQSQMMRPKEKVVLVMGATGSGKTRLSVDLATCFPSEIINSDKMQVYEGLEIVTNKATKEEQRGVPHHLLGTQNPDTEFTASDFCDAASRAIESITRRDKVPIVVGGSNSYMEALVDRFGPRFEWCFLWVDVSVPVLYSYVGQRVDHMLRCGMVNELRPFFNVNGDYTRGIRKAIGVSEFHPYFRRETTASGETRMRLLQEAVRDVKGNTCDLARKQLGRIHMLRSEGWKIHRVCATPVFQKRGRDANEAWNNMVAKPCASIVSQFLYSSANSASGRVAPSMQPN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15033g00001 305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 149 IPR027417 -
Vium15033g00001 305 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 29 287 IPR039657 -
Vium15033g00001 305 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 154 251 - -
Vium15033g00001 305 Pfam IPP transferase 142 238 - -
Vium15033g00001 305 Pfam IPP transferase 65 141 - -
Vium15033g00001 305 Gene3D - 29 287 IPR027417 -
Vium15033g00001 305 MobiDBLite consensus disorder prediction 1 23 - -
Vium15033g00001 305 FunFam Adenylate isopentenyltransferase 5, chloroplastic 154 251 - -
Vium15033g00001 305 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15033g00001 Vium-Chr15033 12203 13411 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15033g00001 142 294 C2H2 Transcription Factor Family AT2G27760 32.044 4.63e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15033g00001 K10760 - gmx:100777757 480.715