Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15027g00001 ATGACTGGAGGTTTCAAGGATAAATTGGGTGAAGGAGGATATGGTTCTGTGTTTAAGGGAAAGTTGTCTAGTGGACCTTATGTGGCAATAAAAATGTTAGGTAAATCAACAAGTAATGGTCAAGATTTTATCAGTGAAGTTGCAACTATCGGAAGAATTCATCATCAAAATATTGTAAAATTGGTTGGATTTTGTGTTGAAGGATCAAAACGTGCTCTTGTTTACGAATTCATGCCTAATGGATCTTTGGATAAAATTATTTTTTCCAAAGATGGAAATATACATTTAAGTTATGATGAAATATATCATATTTCAATTGGAATAGCTAGAGGGATAGCTTATCTTCATCATGGGTGTGAGATGCAAATTCTGCATTTTGATATCAAACCCCACAACATCTTACTAGATGGAAAGCTCACCCCAAAGGTCTCGGACTTTGGATTGGCAAAATTATATCCAATAGATAATAGTGTTGTTACAATGACAGGAGCAAGAGGAACCATTGGGTATATGGCTCCAGAATTATTTTATAATAACATTGGAAGAATATCTCAGAAGGCTGATGTTTATAGCTTTGGAATGCTTCTTATGGAGATGACAAACAAAAGGAAAAACCTAAATCCACATGCACAACATTCAAGTCAATTGTATTTTCCTTTTTGGATTTATAAATATATTGGAAAAGAAAAAGATATAGATATTGAAGATGTCAAAGAGGAAGAAAAGGAAGAAGTAAAGAAAATGATTATAGTTGCACTTTGGTGCATACAATTGAAACCAAATGACCGTCCCACAATGAGTAAAGTAGTTAAAATGCTTGAAGGAGACATTGAAAGCTTGAAAATACCTCCAAAGCCTACTTTATTTCCAGATGAAACAATGTCAAGTGACTTAAGCTTCACTAGTTCTTCTAATTCTTCCATGTAA 927 0.3344 MTGGFKDKLGEGGYGSVFKGKLSSGPYVAIKMLGKSTSNGQDFISEVATIGRIHHQNIVKLVGFCVEGSKRALVYEFMPNGSLDKIIFSKDGNIHLSYDEIYHISIGIARGIAYLHHGCEMQILHFDIKPHNILLDGKLTPKVSDFGLAKLYPIDNSVVTMTGARGTIGYMAPELFYNNIGRISQKADVYSFGMLLMEMTNKRKNLNPHAQHSSQLYFPFWIYKYIGKEKDIDIEDVKEEEKEEVKKMIIVALWCIQLKPNDRPTMSKVVKMLEGDIESLKIPPKPTLFPDETMSSDLSFTSSSNSSM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15027g00001 308 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vium15027g00001 308 Gene3D Transferase(Phosphotransferase) domain 1 79 282 - -
Vium15027g00001 308 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15027g00001 308 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 295 IPR045874 GO:0004672
Vium15027g00001 308 ProSiteProfiles Protein kinase domain profile. 3 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15027g00001 308 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Vium15027g00001 308 MobiDBLite consensus disorder prediction 284 308 - -
Vium15027g00001 308 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vium15027g00001 308 FunFam PR5-like receptor kinase 78 285 - -
Vium15027g00001 308 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15027g00001 308 MobiDBLite consensus disorder prediction 292 308 - -
Vium15027g00001 308 PIRSF ILK 5 282 - -
Vium15027g00001 308 SUPERFAMILY Protein kinase-like (PK-like) 6 274 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15027g00001 Vium-Chr15027 7 1519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15027g00001 1 298 Receptor kinase-like Gene Family AT5G38280 48.684 4.01e-101 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium15027g00001 Pkinase 3.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15027g00001 - - gmx:100305367 476.092