Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15022g00007 CTTACAGGAAACATTCCAGAAGATTTATGCAACTTGACCCTCTTGTTTGATCTTTCAATCAACAACAATAATCTTTCTGGAAATGTTCCCTCGAAAATAGAATCACTGGAGGCACTTAAAATTTTGGAGCTCGGGTCAAATGATTTCACAGGCTTAATCCAGAAAAAAATTGGAAATTTGCGCAATTTATTGTACTTGAATCTGAGCCAGAATAAATTTGAGGGAAATATTCCTTCAGAGCTTGGCAATTTGAATTATCTCTCAAGTCTTGATCTCAGTGGAAATTTGTTGAGTGAAAGATTACCACCAACGCTTGGTGGAATAAAAGGCTTAGAAACATTGAATCTATCCCACAATAGTCTTTCAGGTGGTCTCTCTAGCTTACATGATATGATGAGTTTGACATCTTTTGACATATCATACAACCAGTTTGAGGGTCCACTTCCTGACATTCCAGTCTTCCAGAATGCCACCATTGAAGCTCTGAGAAATAATACAGGCCTGTGTGGCAATGTCACAGGCTTGGAGCCTTGCCCGAAAGTAAGTGGGAAATCTCATAATAATACTACAAGGAAAGTGCTAATAGCAGTTTTACCCGTTACTGTGGCCATTCTAATGCTTGCACTATTTCTTTTTGGTGTCTCCTACAATTTATGCCGAACTTCAAACGAAGAACAAGAGAAGGCTCTAAGTTCACGATCTGCCAGCATGTTTCCAGCATGGAGTTTCGGAGGCAAAATTATGTTTGAGAATATTATTGAAGCCACCGAATATTTTGATGACAAATATCTCATTGGAGTTGGAGGTCAAGGTCGTGTTTACAAAGCAATATTACCCACAGGTGAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTTCAAACGGAGAAGTCCTCAATCAGAAAGCTTTCACAAGGGAGATCCAGGCTTTGACAGAAATCCGACATCGTAACATTGTAAAGTTTCATGGGTTTTGTTCGCATTCACAATATTCACTTTTGGTGTGCGAATTCCTAGAGAGGGGCGATGTGAAGAAGATTTTGAAAGATGATGAACAAGCATCTGCATTTGATTGGAATAAAAGGGTGGATGCTGTTAAAGACGTGGCAAATGCTTTATGCTATATGCACCATGATTGCTTACCTCCAATTGTCCATCGTGATATATCAAGCAAAAATGTTCTTTTGGATTCAGAATATGTAGCTCATGTCTCAGACTTCGGAACAGCTAAGCTTCTTGATCATAGTTCAGCCAATTGGACATCATTTGCAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAACGAGAAATGTGACGTGTATAGTTTTGGGGTCTTGGCATTGGAAATATTATTTGGAAGGCACCCTGGTGATGTTACATCTTTAATGCAATCTTCTTTATCAACTGGTATGATCTCAACGCTTGATCATATGGCATTGATGGATAACTTGGATGAACGTCTACCTGTTCCAACAAATTCTACTTTGAAAGAGGTGGTATCAATTCTCAAGACAGCAATTTCTTGCCTGACTGAAAGTCCACGATCCCGACCAACCATGAAGCTCGTAACCAACGAGCTTGCATTGTCGAGGTCATCTTCAATGTCACACACAGAGCTGAAAGACTGA 1644 0.3978 LTGNIPEDLCNLTLLFDLSINNNNLSGNVPSKIESLEALKILELGSNDFTGLIQKKIGNLRNLLYLNLSQNKFEGNIPSELGNLNYLSSLDLSGNLLSERLPPTLGGIKGLETLNLSHNSLSGGLSSLHDMMSLTSFDISYNQFEGPLPDIPVFQNATIEALRNNTGLCGNVTGLEPCPKVSGKSHNNTTRKVLIAVLPVTVAILMLALFLFGVSYNLCRTSNEEQEKALSSRSASMFPAWSFGGKIMFENIIEATEYFDDKYLIGVGGQGRVYKAILPTGEVVAVKKLHSVSNGEVLNQKAFTREIQALTEIRHRNIVKFHGFCSHSQYSLLVCEFLERGDVKKILKDDEQASAFDWNKRVDAVKDVANALCYMHHDCLPPIVHRDISSKNVLLDSEYVAHVSDFGTAKLLDHSSANWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGVLALEILFGRHPGDVTSLMQSSLSTGMISTLDHMALMDNLDERLPVPTNSTLKEVVSILKTAISCLTESPRSRPTMKLVTNELALSRSSSMSHTELKD 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15022g00007 547 SUPERFAMILY L domain-like 2 170 - -
Vium15022g00007 547 SUPERFAMILY Protein kinase-like (PK-like) 240 532 IPR011009 -
Vium15022g00007 547 FunFam Leucine-rich repeat receptor protein kinase MSP1 221 337 - -
Vium15022g00007 547 FunFam MDIS1-interacting receptor like kinase 2 338 538 - -
Vium15022g00007 547 Gene3D Ribonuclease Inhibitor 1 187 IPR032675 -
Vium15022g00007 547 Pfam Protein kinase domain 261 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15022g00007 547 Gene3D Transferase(Phosphotransferase) domain 1 338 546 - -
Vium15022g00007 547 ProSitePatterns Tyrosine protein kinases specific active-site signature. 383 395 IPR008266 GO:0004672|GO:0006468
Vium15022g00007 547 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 54 178 - -
Vium15022g00007 547 PANTHER LEUCINE RICH REPEAT KINASE 2 1 535 - -
Vium15022g00007 547 ProSiteProfiles Protein kinase domain profile. 259 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15022g00007 547 Gene3D Phosphorylase Kinase; domain 1 219 337 - -
Vium15022g00007 547 Pfam Leucine rich repeat 38 97 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15022g00007 Vium-Chr15022 46961 48875 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15022g00007 1 431 Receptor kinase-like Gene Family AT4G08850 43.836 1.30e-116 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium15022g00007 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15022g00007 - - vum:124822875 1048.11