Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15022g00002 ATGGCTAGGAGTTGGCTTATTGACTTTGGAGGATTTGCAAAGAAAGTGAAGAACACTACTCTATCTTCAGCTGATCAAATCAAGGATTGTGGGGCATATCGAGAATGTCCTAACTGTCATTATCGTATTGATAACAGTGATGTTTCTAGTGAGTGGCCTGGCTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTCTTGGAACATTTAGCAGGAAAATGTGGTGTTGGAAACACACAGCCAGATATGTTTATCAAGGAGTTCATCTCAACTCTGGAAGGAGACCAAGGTATTTGCTACACTCATCCAGAAAATCTTCCAGGTGCTAAAAAAGATGGTAGTTATTTCCATATCTTTCACAAGACAATCAATGCTTATGCAACTAGTCAAAGAAAGCGTAGAAAGATTCATCATCCACAGGGTTTGAGTGAAGAACATTGGCATTGGCACAAGACAGGTAGGACGAAAGCTATAATGCAAAATGGAATGTGCAAAGGCTTTAAGAAAATCATGGTTCTTCATGTAAGATCTAAGAGTGGGTCCAAACCCTTCAAATCCAACTGGGTAATGCATCAGTATCATCTAGGGACGGAAAAAAATGAAAAGGAAGGTGAGTATGTGGTTTCTAAAATTTTTTATCAACAGCAAAAGCAAACTGAGAAAAATGAGGACAATCCAATGGTTGAAGATCTTGACAATATAGTGTCAAGAACAAGTCCCAGGACTCCAAAACCAAATCCTCCCCATCCACCTCGTGCAGGAAACTCTGTTGATTGTGATGATTGTATCGATGAAACTGTACCTCTGCCTTTTGTCCAGACAATTCTTGGAGAATCACATGCCCCTATATCTGATGTTCAGGACCTAGACAATTCTGCATGCTTACCTGGCGAATTACAAGCTGAGAAACACACTGAATATGATGGCTTGGACGACATATTATTGTGCAAGGAAATCTTAGATTCTTCTGATCTGTTAAATGATTCTGGATTGGACTCCAGCAATCTCTGTGACTTAGAATTCTATGATAATCAAATAGCTAGAAATGATAACGAATCTTGTGGAATATCTGTCCTGGATACGCTGGAATTAGACACTCCGGACTTTGATCATTCTAATTTGAACTTCTGTTCTCAGTACAGTATCCTTGAGTGGATGGGCAGACTATGA 1176 0.3954 MARSWLIDFGGFAKKVKNTTLSSADQIKDCGAYRECPNCHYRIDNSDVSSEWPGFPLGVKFDPSDVELLEHLAGKCGVGNTQPDMFIKEFISTLEGDQGICYTHPENLPGAKKDGSYFHIFHKTINAYATSQRKRRKIHHPQGLSEEHWHWHKTGRTKAIMQNGMCKGFKKIMVLHVRSKSGSKPFKSNWVMHQYHLGTEKNEKEGEYVVSKIFYQQQKQTEKNEDNPMVEDLDNIVSRTSPRTPKPNPPHPPRAGNSVDCDDCIDETVPLPFVQTILGESHAPISDVQDLDNSACLPGELQAEKHTEYDGLDDILLCKEILDSSDLLNDSGLDSSNLCDLEFYDNQIARNDNESCGISVLDTLELDTPDFDHSNLNFCSQYSILEWMGRL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15022g00002 391 SUPERFAMILY NAC domain 40 216 IPR036093 GO:0003677|GO:0006355
Vium15022g00002 391 FunFam NAC domain-containing protein 8 64 220 - -
Vium15022g00002 391 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 322 IPR044799 GO:0003700
Vium15022g00002 391 MobiDBLite consensus disorder prediction 238 258 - -
Vium15022g00002 391 ProSiteProfiles NAC domain profile. 55 216 IPR003441 GO:0003677|GO:0006355
Vium15022g00002 391 Gene3D NAC domain 64 221 IPR036093 GO:0003677|GO:0006355
Vium15022g00002 391 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15022g00002 Vium-Chr15022 6247 13186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15022g00002 33 218 NAC Transcription Factor Family AT4G28500 49.468 3.36e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium15022g00002 NAM 4.6e-18 No_clan