Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15022g00001 ATGGCTAGGAGTTGGCTTATTGACTTTGGAGGATTTGCAAAGAAAGTGAAGAACACTACTCTATCTTCAGCTGATCAAATCAAGGATTGTGGGGCATATCGAGAATGTCCTAACTGTCATTATCGTATTGATAACAGTGATGTTTCTAGTGAGTGGCCTGGCTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTCTTGGAACATTTAGCAGGAAAATGTGGTGTTGGAAACACACAGCCAGATATGTTTATCAAGGAGTTCATCTCAACTCTGGAAGGAGACCAAGGTATTTGCTACACTCATCCAGAAAATCTTCCAGGTGCTAAAAAAGATGGTAGTTATTTCCATATCTTTCACAAGACAATCAATGCTTATGCAACTAGTCAAAGAAAGCGTAGAAAGATTCATCATCCACAGGGTTTGAGTGAAGAACATTGGCATTGGCACAAGACAGGTAGGACGAAAGCTATAATGCAAAATGGAATGTGCAAAGGCTTTAAGAAAATCATGGTTCTTCATGTAAGATCTAAGAGTGGGTCCAAACCCTTCAAATCCAACTGGGTAATGCATCAGTATCATCTAGGGACGGAAAAAAATGAAAAGGAAGGTGAGTATGTGGTTTCTAAAATTTTTTATCAACAGCAAAAGCAAACTGAGAAAAATGAGGACAATCCAATGGTTGAAGATCTTGACAATATAGTGTCAAGAACAAGTCCCAGGACTCCAAAACCAAATCCTCCCCATCCACCTCGTGCAGGAAACTCTGTTGATTGTGATGATTGTATCGATGAAACTGTACCTCTGCCTTTTGTCCAGGACCTAGACAATTCTGCATGCTTACCTGGCGAATTACAAGCTGAGAAACACACTGAATATGATGGCTTGGACGACATATTATTGTGCAAGGAAATCTTAGATTCTTCTGATCTGTTAAATGATTCTGGATTGGACTCCAGCAATCTCTGTGACTTAGAATTCTATGATAATCAAATAGCTAGAAATGATAACGAATCTTGTGGAATATCTGTCCTGGATACGCTGGAATTAGACACTCCGGACTTTGATCATTCTAATTTGAACTTCTGTTCTCAGTACAGTATCCTTGAGTGGATGGGCAGACTATGA 1134 0.3951 MARSWLIDFGGFAKKVKNTTLSSADQIKDCGAYRECPNCHYRIDNSDVSSEWPGFPLGVKFDPSDVELLEHLAGKCGVGNTQPDMFIKEFISTLEGDQGICYTHPENLPGAKKDGSYFHIFHKTINAYATSQRKRRKIHHPQGLSEEHWHWHKTGRTKAIMQNGMCKGFKKIMVLHVRSKSGSKPFKSNWVMHQYHLGTEKNEKEGEYVVSKIFYQQQKQTEKNEDNPMVEDLDNIVSRTSPRTPKPNPPHPPRAGNSVDCDDCIDETVPLPFVQDLDNSACLPGELQAEKHTEYDGLDDILLCKEILDSSDLLNDSGLDSSNLCDLEFYDNQIARNDNESCGISVLDTLELDTPDFDHSNLNFCSQYSILEWMGRL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15022g00001 377 MobiDBLite consensus disorder prediction 238 258 - -
Vium15022g00001 377 Gene3D NAC domain 64 221 IPR036093 GO:0003677|GO:0006355
Vium15022g00001 377 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 309 IPR044799 GO:0003700
Vium15022g00001 377 ProSiteProfiles NAC domain profile. 55 216 IPR003441 GO:0003677|GO:0006355
Vium15022g00001 377 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
Vium15022g00001 377 FunFam NAC domain-containing protein 8 64 220 - -
Vium15022g00001 377 SUPERFAMILY NAC domain 40 216 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15022g00001 Vium-Chr15022 6247 13187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15022g00001 33 218 NAC Transcription Factor Family AT4G28500 49.468 2.85e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium15022g00001 NAM 4.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15022g00001 - - gmx:100780442 582.022