Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15021g00002 ATGAGTTCAACTCCCAGTACGAGACTCAGCCAGCAGGAACACTTTCATCTTGAAGATTCTGGCCAAATAGAGAGGTCCCTTTGGGTTCTGGAACCTCCCAATCCACCACCTCTAAGGAACAAGCTATTCACTCCACTCAAGAAATCCATCTCCTCTTTCTCATCCAATAACAAGCCTTGCCATCGACGTCTTCTTTCATTCTTAGAGACTTTGTTTCCCATCCTTTGCTGGTTCAAAAGTTACACAGCCTCAAAGTTTAAAAATGATTTGCTAGCCGGTTTAACTCTTGCTAGCCTCAGCATACCGCAGAGTATAGGATATGCTAATTTGGCGAAGCTTGATCCTCAGTATGGCTTGTACACCAGTGTTGTTCCTCCTCTTATCTATGCTGTGATGGGGAGTTCAAGAGAAATAGCCATTGGACCTGTAGCTGTAGTATCATTGCTTCTGTCCTCCCTAGTCCCCAAAGTGGTAGATCCTGCTGCTGATCCTGATGCCTACAGGAGTGTTGTCTTTACCGTGACCTTATTTGCTGGAATCTTTCAAGCTGCATTCGGTATTTTCAGGTTGGGGTTTCTTGTGGATTTTCTTTCACATGCTGCACTTGTTGGATTCATGGCAGGCGCAGCCATCGTTATTGGTCTGCAGCAGCTGAAGGGGTTGCTGGGGATTACTCACTTTACCAACAAAACTGATGTAATATCCGTGTTGGAGTCTGTATACAAGTCACTCCGCCAACAGATAACATCAACAGAAAAATGGTACCCTCTGAATTTTGTCATCGGGTGTTCATTCCTGATATTCCTGTTAATAGCTCGATTTGTTGGCAGAAGAAACAAAAAACTTTTCTGGTTGCCAGCTATTGCTCCTCTTGTGTCGGTTTTACTATCAACTTTAATTGTTTATTTGTCAAAAGCTGATCAGAATGGGGTTAATATAGTAAGGCATGTCAAAGGAGGCTTGAACCCAAGTTCAGTTCACAAGTTACAATTTCATGGTCCAAATGTTGGACAAACAGCTAAAATTGGATTGATTTCTGCCGTTATTGCTCTCACTGAAGCAATAGCAGTTGGTAGATCTTTTGCTTCCATTAAGGGATACCATCTTGATGGCAACAAAGAAATGTTGGCAATGGGATGCATGAACATTGCGGGATCTCTCTCTTCATGCTATGTGGCAACTGGTTCTTTCTCAAGGACTGCAGTAAATTTCAGTGCAGGATGTCAAACATCAGTATCAAATATTGTGATGGCAGTTACTGTGTTTCTGTGTCTTGAATTGTTTACAAGGCTTCTGTACTACACTCCTATGGCCATACTTGCATCTATCATTCTCTCTGCACTTCCGGGATTAATTGACATAAATGAAGCTTGTTATATTTGGAAGGTTGACAAATTTGACTTTCTTGCTTGCATTGGTGCCTTCTTCGGAGTCTTGTTTGTATCAGTGGAAACTGGTCTTCTTGTTGCAGTCTCAATCTCCTTTGCAAAGATACTGATACAATCAATCAGACCAGGGATAGAAGTTTTAGGCCGAGTTCCAAGAACAGAAGCTTTCTGTGATGTTAGTCAATATCCTATGGCCACAAGCACTCCAGGCATTTTGGTGATTCGCATAAGTTCTGGTTCACTCTGCTTTGCAAATGCTAATTTTATTAGAGAAAGAATACTGAAGTGGGTAATGGAAGAAGAAAACGAACTTGCCAAGGGAAGGGTCAATGCAGTGATCTTAGACATGGGCAATCTCATGAATGTTGATACTTCTGGGATTCTAGTACTGGAGGAACTGCATAAGAGGTTGTTTTCGCGTGGCGTACAGTTGGCCATGGTGAACCCCAGGTGGCTAGTGATTTACAAGCTCAAAGTGGCAAACTTTGTGGATAAAATCGGAAAGAAATGGGTTTTTCTTACTGTTGCTGAAGCTGTAGATGCATGTCTATCTTCAAAATTTCCTGAACCATGA 1962 0.421 MSSTPSTRLSQQEHFHLEDSGQIERSLWVLEPPNPPPLRNKLFTPLKKSISSFSSNNKPCHRRLLSFLETLFPILCWFKSYTASKFKNDLLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSLVPKVVDPAADPDAYRSVVFTVTLFAGIFQAAFGIFRLGFLVDFLSHAALVGFMAGAAIVIGLQQLKGLLGITHFTNKTDVISVLESVYKSLRQQITSTEKWYPLNFVIGCSFLIFLLIARFVGRRNKKLFWLPAIAPLVSVLLSTLIVYLSKADQNGVNIVRHVKGGLNPSSVHKLQFHGPNVGQTAKIGLISAVIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSLSSCYVATGSFSRTAVNFSAGCQTSVSNIVMAVTVFLCLELFTRLLYYTPMAILASIILSALPGLIDINEACYIWKVDKFDFLACIGAFFGVLFVSVETGLLVAVSISFAKILIQSIRPGIEVLGRVPRTEAFCDVSQYPMATSTPGILVIRISSGSLCFANANFIRERILKWVMEEENELAKGRVNAVILDMGNLMNVDTSGILVLEELHKRLFSRGVQLAMVNPRWLVIYKLKVANFVDKIGKKWVFLTVAEAVDACLSSKFPEP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15021g00002 653 Pfam STAS domain 525 641 IPR002645 -
Vium15021g00002 653 NCBIfam sulfate permease 73 641 IPR001902 GO:0016020|GO:0055085
Vium15021g00002 653 SUPERFAMILY SpoIIaa-like 529 645 IPR036513 -
Vium15021g00002 653 ProSiteProfiles STAS domain profile. 541 645 IPR002645 -
Vium15021g00002 653 Pfam Sulfate permease family 86 472 IPR011547 GO:0016020
Vium15021g00002 653 PANTHER SULFATE TRANSPORTER 56 646 IPR001902 GO:0016020|GO:0055085
Vium15021g00002 653 CDD STAS_SulP_like_sulfate_transporter 525 638 - -
Vium15021g00002 653 Gene3D STAS domain 504 648 IPR036513 -
Vium15021g00002 653 ProSitePatterns SLC26A transporters signature. 115 136 IPR018045 GO:0008271|GO:0008272
Vium15021g00002 653 FunFam Sulfate transporter 31 504 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15021g00002 Vium-Chr15021 4309 8650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15021g00002 22 649 Inorganic Solute Cotransporters AT5G10180 64.734 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15021g00002 K17469 - gmx:100805269 1145.57