Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15021g00001 ATGAGTTCAACTCCCAGTACGAGACTCAGCCAGCAGGAACACTTTCATCTTGAAGATTCTGGCCAAATAGAGAGGTCCCTTTGGGTTCTGGAACCTCCCAATCCACCACCTCTAAGGAACAAGCTATTCACTCCACTCAAGAAATCCATCTCCTCTTTCTCATCCAATAACAAGCCTTGCCATCGACGTCTTCTTTCATTCTTAGAGACTTTGTTTCCCATCCTTTGCTGGTTCAAAAGTTACACAGCCTCAAAGTTTAAAAATGATTTGCTAGCCGGTTTAACTCTTGCTAGCCTCAGCATACCGCAGAGTATAGGATATGCTAATTTGGCGAAGCTTGATCCTCAGTATGGCTTGTACACCAGTGTTGTTCCTCCTCTTATCTATGCTGTGATGGGGAGTTCAAGAGAAATAGCCATTGGACCTGTAGCTGTAGTATCATTGCTTCTGTCCTCCCTAGTCCCCAAAGTGGTAGATCCTGCTGCTGATCCTGATGCCTACAGGAGTGTTGTCTTTACCGTGACCTTATTTGCTGGAATCTTTCAAGCTGCATTCGGTATTTTCAGGTTGGGGTTTCTTGTGGATTTTCTTTCACATGCTGCACTTGTTGGATTCATGGCAGGCGCAGCCATCGTTATTGGTCTGCAGCAGCTGAAGGGGTTGCTGGGGATTACTCACTTTACCAACAAAACTGATGTAATATCCGTGTTGGAGTCTGTATACAAGTCACTCCGCCAACAGATAACATCAACAGAAAAATGGTACCCTCTGAATTTTGTCATCGGGTGTTCATTCCTGATATTCCTGTTAATAGCTCGATTTGTTGGCAGAAGAAACAAAAAACTTTTCTGGTTGCCAGCTATTGCTCCTCTTGTGTCGGTTTTACTATCAACTTTAATTGTTTATTTGTCAAAAGCTGATCAGAATGGGGTTAATATAGTAAGGCATGTCAAAGGAGGCTTGAACCCAAGTTCAGTTCACAAGTTACAATTTCATGGTCCAAATGTTGGACAAACAGCTAAAATTGGATTGATTTCTGCCGTTATTGCTCTCACTGAAGCAATAGCAGTTGGTAGATCTTTTGCTTCCATTAAGGGATACCATCTTGATGGCAACAAAGAAATGTTGGCAATGGGATGCATGAACATTGCGGGATCTCTCTCTTCATGCTATGTGGCAACTGGTTCTTTCTCAAGGACTGCAGTAAATTTCAGTGCAGGATGTCAAACATCAGTATCAAATATTGTGATGGCAGTTACTGTGTTTCTGTGTCTTGAATTGTTTACAAGGCTTCTGTACTACACTCCTATGGCCATACTTGCATCTATCATTCTCTCTGCACTTCCGGGATTAATTGACATAAATGAAGCTTGTTATATTTGGAAGGTTGACAAATTTGACTTTCTTGCTTGCATTGGTGCCTTCTTCGGAGTCTTGTTTGTATCAGTGGAAACTGGTCTTCTTGTTGCAGTCTCAATCTCCTTTGCAAAGATACTGATACAATCAATCAGACCAGGGATAGAAGTTTTAGGCCGAGTTCCAAGAACAGAAGCTTTCTGTGATGTTAGTCAATATCCTATGGCCACAAGCACTCCAGGCATTTTGGTGATTCGCATAAGTTCTGGTTCACTCTGCTTTGCAAATGCTAATTTTATTAGAGAAAGAATACTGAAGTGGGTAATGGAAGAAGAAAACGAACTTGCCAAGGGAAGGGTCAATTTCCAAGAACAGAAGCTTTCTGGAAGGGTCAATGCAGTGATCTTAGACATGGGCAATCTCATGAATGTTGATACTTCTGGGATTCTAGTACTGGAGGAACTGCATAAGAGGTTGTTTTCGCGTGGCGTACAGTTGGCCATGGTGAACCCCAGGTGGCTAGTGATTTACAAGCTCAAAGTGGCAAACTTTGTGGATAAAATTGGAAAGAAATGGGTTTTTCTTACTGTTGCTGAAGCTGTAGATGCATGTCTATCTTCAAAATTTCCTGAACCATGA 1995 0.4206 MSSTPSTRLSQQEHFHLEDSGQIERSLWVLEPPNPPPLRNKLFTPLKKSISSFSSNNKPCHRRLLSFLETLFPILCWFKSYTASKFKNDLLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSLVPKVVDPAADPDAYRSVVFTVTLFAGIFQAAFGIFRLGFLVDFLSHAALVGFMAGAAIVIGLQQLKGLLGITHFTNKTDVISVLESVYKSLRQQITSTEKWYPLNFVIGCSFLIFLLIARFVGRRNKKLFWLPAIAPLVSVLLSTLIVYLSKADQNGVNIVRHVKGGLNPSSVHKLQFHGPNVGQTAKIGLISAVIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSLSSCYVATGSFSRTAVNFSAGCQTSVSNIVMAVTVFLCLELFTRLLYYTPMAILASIILSALPGLIDINEACYIWKVDKFDFLACIGAFFGVLFVSVETGLLVAVSISFAKILIQSIRPGIEVLGRVPRTEAFCDVSQYPMATSTPGILVIRISSGSLCFANANFIRERILKWVMEEENELAKGRVNFQEQKLSGRVNAVILDMGNLMNVDTSGILVLEELHKRLFSRGVQLAMVNPRWLVIYKLKVANFVDKIGKKWVFLTVAEAVDACLSSKFPEP 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15021g00001 664 FunFam Sulfate transporter 31 504 659 - -
Vium15021g00001 664 Gene3D STAS domain 504 659 IPR036513 -
Vium15021g00001 664 Pfam Sulfate permease family 86 472 IPR011547 GO:0016020
Vium15021g00001 664 ProSiteProfiles STAS domain profile. 541 656 IPR002645 -
Vium15021g00001 664 CDD STAS_SulP_like_sulfate_transporter 525 649 - -
Vium15021g00001 664 SUPERFAMILY SpoIIaa-like 529 656 IPR036513 -
Vium15021g00001 664 Pfam STAS domain 525 652 IPR002645 -
Vium15021g00001 664 ProSitePatterns SLC26A transporters signature. 115 136 IPR018045 GO:0008271|GO:0008272
Vium15021g00001 664 PANTHER SULFATE TRANSPORTER 56 657 IPR001902 GO:0016020|GO:0055085
Vium15021g00001 664 NCBIfam sulfate permease 73 652 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15021g00001 Vium-Chr15021 4309 13566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15021g00001 22 660 Inorganic Solute Cotransporters AT5G10180 64.441 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15021g00001 K17469 - gmx:100805269 1137.09