Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1501g00006 ATGGCATTCAAGAAGTTCATAATCAGAAGCTACGAGGGTCACTCTGATAGAGCTAAGGTAGAAGATCTTGAAAGAAGATGCAAGGTAGGACCATCAGAAAGCGTGTTAGACACTATGGGTGACCCCATGTGTAGGATTCGAAACAGTCCCATCTACATAATGCTGGTGGCAGAGATGGAGAATGAACTGGTTGGTGTCATTCAAGGCTTAATAAAAATGGTGACAGTTCATACTCATCCTCCAAAGGATATGGCAAAAGTGGGGTACGTCTTGGGCCTCAGAGTTTCTCCTCACAGCAGAAGAAATGGCGTTGGCTCAAGTCTCGTGCAAAGACTAGAAGAATGGTTCACATCCAATGATGTGGAATATGCATACATGGCCACAGAGAAAGAAAACCACGCCTCGATGAACCTCTTCATGGAGAAGTTTTGCTACACCAAGTTTAGAACTCCAACTATACTCATAAACCCAGTGAATAGTCATCTGTTTGAAATTTCATCAGACATTGAGATAGCTATGGTCAAGGTTGAAGAGGCTGAATCCCTTTATAGAAGATTCATGGGATCCACTGAGTTCTTCCCCAGTGACATAGAGAATATACTAAGGAACAAGCTCAACCTGGGAACTTGGGTGGCTTATTTCAAAGGGGATAGTGATTTTGGTTTAGATGGAAAAGTTCCCAATAGTTGGGCTATGGTTAGTGTTTGGAACTGTGGGGAAATCTTCAAGCTGAAGATAGGGAAAGCACCTTTGTCTTGCATGTTATTCACAAAGAGCTGGAGCTTGATTGGTAGAATGTTCCCATGCATGAAATTGCCAACCTTGCCCAATTTCTTTAGCCCTTTTGGGTTCTACTTCATGTATGGCCTGTACCAAGAAGGGCCATTGTCTGGAAAGTTGGTTAGGGCATTGTGCAAGTTTGTGCATAACATGGCTTCTAGGAGTGAACAGTGCAAGATCATTGTGACAGAAATTGGAGGAAGAGATGATCTGATTCATCATATTCCACATTGGAAATTGCTTTCATGCGAGGACTTGTGGTGCATAAAGGCTTTGAACAACGAAGGAACTAACAAGTTTCATGAATTGAGCAACACTCAGCCACCAACAACTCTCTTTGTAGATCCACGAGAAGTCTAA 1140 0.4263 MAFKKFIIRSYEGHSDRAKVEDLERRCKVGPSESVLDTMGDPMCRIRNSPIYIMLVAEMENELVGVIQGLIKMVTVHTHPPKDMAKVGYVLGLRVSPHSRRNGVGSSLVQRLEEWFTSNDVEYAYMATEKENHASMNLFMEKFCYTKFRTPTILINPVNSHLFEISSDIEIAMVKVEEAESLYRRFMGSTEFFPSDIENILRNKLNLGTWVAYFKGDSDFGLDGKVPNSWAMVSVWNCGEIFKLKIGKAPLSCMLFTKSWSLIGRMFPCMKLPTLPNFFSPFGFYFMYGLYQEGPLSGKLVRALCKFVHNMASRSEQCKIIVTEIGGRDDLIHHIPHWKLLSCEDLWCIKALNNEGTNKFHELSNTQPPTTLFVDPREV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1501g00006 379 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 13 151 IPR016181 -
Vium1501g00006 379 CDD NAT_SF 54 125 - -
Vium1501g00006 379 Pfam Acetyltransferase (GNAT) family 44 142 IPR000182 GO:0016747
Vium1501g00006 379 Gene3D - 8 148 - -
Vium1501g00006 379 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 6 208 IPR000182 GO:0016747
Vium1501g00006 379 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 4 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1501g00006 Vium-Chr1501 138386 139974 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vium1501g00006 Acetyltransf_1 6.3e-14 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1501g00006 - - pvu:PHAVU_008G259100g 737.643