Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1501g00004 ATGGGAGAACTTAAGATTAGAGGGAACCTAGTAGAAGAAAAGACATGGTCAAAGATACCCACTTTAATCAAGCCTATTCCTCTAAGAGCTCAACCATGGCAAAAACCTTCCAATCCACTCCATAAGCTTGCCACCATTCCAGAAAATGATCACATTCTTACAGAGGAAAACCCTAATGGAGATCACAACACTTCCAATGAAGTCCAAGAAAACATTGAGCAAGAAATGAAAAATAAGTTTAAAAGAATCGTTTCAAACCGACATGCTGCACGAAGATCGAGATTGAAGAAACTTGCATACATCGATGAGCTAGAAAACGAATTGAAAGCGTACGAGAGGAAGAAAGAAGTTCTCCACGGAGAAATTGCAGAGCAACGAAAGAAGCATCTGTCGTTGGAAATTGAGCATCATACTTTGAAATTTCATTTGGCTGCTCGTGAAAAGCAAAGAATTCTTCAAGAAGTTGAGATTGAAAAGAACAGAGCAGAAGTTGATAAAATGTTGGAAGTGCAAAGGAGAATGGTTAATTTCAGATCGTTGCAGCTTATGACCAATTCCAACTTTAACCCTTCAGCCTTCGCCTGA 585 0.3915 MGELKIRGNLVEEKTWSKIPTLIKPIPLRAQPWQKPSNPLHKLATIPENDHILTEENPNGDHNTSNEVQENIEQEMKNKFKRIVSNRHAARRSRLKKLAYIDELENELKAYERKKEVLHGEIAEQRKKHLSLEIEHHTLKFHLAAREKQRILQEVEIEKNRAEVDKMLEVQRRMVNFRSLQLMTNSNFNPSAFA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1501g00004 194 Gene3D - 77 161 - -
Vium1501g00004 194 Coils Coil 145 165 - -
Vium1501g00004 194 Coils Coil 94 128 - -
Vium1501g00004 194 Pfam bZIP transcription factor 79 131 IPR004827 GO:0003700|GO:0006355
Vium1501g00004 194 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Vium1501g00004 194 SUPERFAMILY Leucine zipper domain 79 132 IPR046347 GO:0003700|GO:0006355
Vium1501g00004 194 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 139 IPR004827 GO:0003700|GO:0006355
Vium1501g00004 194 PANTHER BASIC LEUCINE ZIPPER 34 62 185 - -
Vium1501g00004 194 SMART brlzneu 73 138 IPR004827 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1501g00004 55 154 bZIP Transcription Factor Family AT3G58120 28.000 2.18e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1501g00004 bZIP_1 2.1e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1501g00004 - - var:108336685 377.096