Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1501g00001 ATGGCACTATTCTCTCCGTTGAAGTTATTGCCGGCGGTGCTGGCTCTGTTTCTGGCGTTGAGCCAGAAACAGAGTCTCTGTTCGACGCTCGAGAGCGAAGGTTTGGCGCTGCTGGCGTTGAAGGAGAGTGTGGTGACAGACCCGCAGGGGGCTTTATCAAGCTGGAGTGGCGAAAACGGAGACGTTATGGATCCATGCTCGTGGTTCGGTGTGGAGTGCTCTTCTCACGGTAATGTCGTGACCTTGAATTTGAAAGACCTTTGTCTTGAAGGAACACTAGCACCAGAAGTTGGAATGCTGGCTCACATAAAATCAATCATTTTGCGCAACAATTCTTTCGTTGGAGAGATTCCTGAGGAGATCATATACTTACAGGAGTTGGAAGTCCTTGACTTGGGACATAACAACTTCAGTGGATCACTTCCATTTGACCATGGCAATATGCCATCCCTGACCACTCTTCTATTGGACAACAATTACCATCTGACCAACTTAACTCCAGAGCTGTATAAGCTCAAGATGAATTCTGAATTTCGTGCTAATGAAGAACAACTTACCGGTGCCACCACTACTAGAGAAGCATATGTTGGCAGATGTAGTTTATGGCACATTGGCCAACATGGGGATAGAGCAGACCGGAGGCAACTTCTCAAAGTAGCAAATGTTGCTAGTACACCCAAAATTCAAAGGCATGTTAACCAAGGGATACTTAAACAATTAGCATCGCATTTCCCTTTTGCATTACCACCAAATTTTGAGCCTTTCTCATCACCACCATCACTTTCACCGTCAGAAAGTCCCTCATATTCGCCATCACCTTCTCCCTCAGATAGTTTTTTCACTCCTTCTCCCTCTCCTTCGCCTGTAGTGTTACTAACTCCAGACGTATCACCACCAATAAACACTCCTCTCACTGTACCTACACCACCAGTTAATTGGGTTCCAGCACCTAGCCCTTCTCCATTTTCTACCCAAGGGAACACGTACAATTCCAATCAAATACATCACTCGGCGATAATCTGGTCTGCGGTTGGGGGTTTCTCTTTATTGATTTTGATGTCAGCCATTACTTTTGCTTGCTTCCGAAGTAGGAAGGTTGTGACTGTTAAACCTTGGTCCACAGGATTGAGTGGCCAGCTGCAGAAAGCCTTTGTAAAAGGTGTGCCAAGTCTCAAACGAGGAGAAATTGAAGCAGCTTGTGAATATTTCAGCAACATTATCGGTTCGCTTCCTGATGGAACTGTGTATAAGGGGACTCTCTCCAGTGGAGTCGAGATAGCTGTAGCATCCTCTGCTGTGAACACAGCTCAAAAATGGTCAAAAAGCATGGAAGCTCAATTCCGAAATAAGATAGCAACATTATCTAGAGTGAATCACAAGAATTTTGTGAATCTAATTGGGTACTGTGAAGAGAATAAGCCGTTCTCAAGAATGATGGTGTTTGAGTACGCTCCAAATGGAACACTCTTTGAGCATATACACATTAGAGAAGCAGAAGAACTAAATTGGACTATGAGAATGAGGATAGCTATGGGAATAGCCTACTGCCTAGAGTATATGCATGACCTAAAACCCTCCATTGCCCATAGAAACCTGCAATCTTCATTTATATACCTTACTGAAGATTATGCTGCTAAAATATCAGACCTTAGCTTATGGAATGACATGTGTGCTGCAAAAAATGGGTCTGCAACCACACAACTCCTGGAAACATCATCAGCAGATGCCAAGGACAATGTTTACAGCTTCGGAATAATATTGTTTGAGTTGATTACGGGGAAAATCCCCATTGCCGGGAACAATGATCTTCTTGCAGATTGGGCAGCAGAATATTTAAGGTGGGGGAAATCCTTGAGAGATGTTGTGGATCCAAGACTGAACTCTTTGCAGGAAGAAGAGATTGAAGAATGGTCTGAAGTGATGAGAAACTGTGTACAACCAGATCGAGAGAAAAGGCCAACTATGAAAGAAGTTACATCTAGACTCAAGGAAATAACAGCTATGGGGCCTGATGGAGCAAACCCAAAGGCATCACCACTTTGGTGGGCAGAAATGGCAATTACGTCCACTGATTCAAGTTGA 2082 0.4404 MALFSPLKLLPAVLALFLALSQKQSLCSTLESEGLALLALKESVVTDPQGALSSWSGENGDVMDPCSWFGVECSSHGNVVTLNLKDLCLEGTLAPEVGMLAHIKSIILRNNSFVGEIPEEIIYLQELEVLDLGHNNFSGSLPFDHGNMPSLTTLLLDNNYHLTNLTPELYKLKMNSEFRANEEQLTGATTTREAYVGRCSLWHIGQHGDRADRRQLLKVANVASTPKIQRHVNQGILKQLASHFPFALPPNFEPFSSPPSLSPSESPSYSPSPSPSDSFFTPSPSPSPVVLLTPDVSPPINTPLTVPTPPVNWVPAPSPSPFSTQGNTYNSNQIHHSAIIWSAVGGFSLLILMSAITFACFRSRKVVTVKPWSTGLSGQLQKAFVKGVPSLKRGEIEAACEYFSNIIGSLPDGTVYKGTLSSGVEIAVASSAVNTAQKWSKSMEAQFRNKIATLSRVNHKNFVNLIGYCEENKPFSRMMVFEYAPNGTLFEHIHIREAEELNWTMRMRIAMGIAYCLEYMHDLKPSIAHRNLQSSFIYLTEDYAAKISDLSLWNDMCAAKNGSATTQLLETSSADAKDNVYSFGIILFELITGKIPIAGNNDLLADWAAEYLRWGKSLRDVVDPRLNSLQEEEIEEWSEVMRNCVQPDREKRPTMKEVTSRLKEITAMGPDGANPKASPLWWAEMAITSTDSS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1501g00001 693 SUPERFAMILY Protein kinase-like (PK-like) 396 662 IPR011009 -
Vium1501g00001 693 PANTHER PROTEIN MALE DISCOVERER 2 12 690 - -
Vium1501g00001 693 ProSiteProfiles Protein kinase domain profile. 401 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1501g00001 693 Gene3D Transferase(Phosphotransferase) domain 1 484 672 - -
Vium1501g00001 693 FunFam Inactive receptor-like serine/threonine-protein kinase 375 483 - -
Vium1501g00001 693 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Vium1501g00001 693 SUPERFAMILY L domain-like 27 173 - -
Vium1501g00001 693 Pfam Protein tyrosine and serine/threonine kinase 406 662 IPR001245 GO:0004672|GO:0006468
Vium1501g00001 693 MobiDBLite consensus disorder prediction 256 282 - -
Vium1501g00001 693 Gene3D Ribonuclease Inhibitor 29 213 IPR032675 -
Vium1501g00001 693 Gene3D Phosphorylase Kinase; domain 1 369 483 - -
Vium1501g00001 693 MobiDBLite consensus disorder prediction 256 270 - -
Vium1501g00001 693 FunFam Nuclear pore complex protein NUP107 30 191 - -
Vium1501g00001 693 Pfam Leucine rich repeat 102 159 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1501g00001 Vium-Chr1501 11733 18425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1501g00001 381 665 Receptor kinase-like Gene Family AT4G31110 33.876 2.02e-41 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vium1501g00001 PK_Tyr_Ser-Thr 5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1501g00001 - - gmx:100809790 1047.34