Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15019g00002 ATGCCGGTTTCTGAGACAACGACAGCCGTTGCCGTTTCGACAGAGAAGATGTTTTCAGAGAACTCCTCTCATCAATTAGTTCTTGTTCGTTCGCGATCCGAGGGAGACATCGAGTTGTTCTCGTTGGAGAGGTCGAGAAGAGAACATTTCATCGGAAAGTGTTCGAAGCAGAGGTTGACGAGAACCGCGACGGAGGTGTTCGTCCACCGCGCTCCGCCGGGAACGAGAAACAGAGCGGTGTTGAGGGATTCCGACGAAGCACCGCAGTCCAAGCCGAAAAGCGCGAAAGTTGAGGATTCGGGAGTGCGAGCGTTTTTCCTGATAAAGAACTTGGACACGGGGAAGGAGTTTATTGTGAACGAATGCACCGAAAGCGGTGCGTGGAACAGGCTGAGTGATTTACAGACGGGGAGGCAGTTAACTATGGATGAGTTTGAAAAGACGGTGGGGAAATCGCGCGTGGTTAACGAGCTTATGCGACGCAGTACGAGGAACGAGAATTTGTCGCGGAAGCTGACTTCGAGTTCGTACATTTCAAGAAGTTTGAGGATGAGCAAGAGAAGAGGGGTTGCATTTCTGAAGAACATAAAAGGTGTGGCGAGTGGGTTCATTGGGGAGAGAGAGGCTGTTGGTAACGCAGCCGCCGCAACGGCGGCGGCGGAGAAGAGTCAGTGGGTGCGAGTGCGGCAGAGCGGGAAGTCGCACAAGGAGGTTTCGGCGTTGCATCTGTGTCAGGAGCTTCAGGGGCACGACGGGTCGATTTGGACGATTAGGTTTAGTTTGGATGGGAGGTTTCTGGCGAGTGCAGGTGAGGACAAGGTGATACACGTGTGGGAAGTGCAGGAGTGTGAGCTTATGTCGTTGAGGATCGACGAGGGGAGTTTCACACCTATTCACCCTTCCTTGCTTGCCTCCAACGACGGTTCGCCTTTCTCTCCGGCGGCGGCTGACAAGAAGAAGAAGGGCAAATTCGGAACCAAAAAGGGCCCCGCCATTCCTGACTATGTTCATGTTCCTGAAACTGTCTTCTCACTGTCCGACAAACCCTTCTGCACTTTCCAAGGACATTTGGATGATGTTTTAGATTTGTCATGGTCGCGATCTAAGCTACTTCTCTCATCTTCAATGGATAAAACGGTCAGATTATGGAACTTGGAGACTAGGACTTGCTTGTACAGGTTTCCCCACAGTGACTATGTAACCTGCATACAATTCAATCCTCTCAAAGATGATGTTTTCATAAGTGGTTCGCTGGACGCTAGGGTTAGATTATGGAGCATTCCTGAACGCCATGTTGTGGATTGGATTGATATCAATGACATGGTTACTGCATTGTCGTTTACACCTGACGGTCAGGGTGCTATTGTTGGTACCCACAAGGGCGGTTGTCGTACATATAGCACAAAAGATTGCAAACTAACTCAAACAGGAACAATTGAGATTTCACAAAAGAAATCCCAACTAAGAAAAGTCACTGGTTTTCAGTTTGTTCCAGGCAAACCATCAGAAATTCTTGTAACTTCAGCAGATTCAAGAATAAGAATATTGGAAGGTTCAGAAGTAGTTCAAAAGTACAAAGGTTTTCGTAATGCAAACAGTCAAATTGCAGCTTCATTTAGTCCAGATGGAAGATATATTATAAGTGCAAGTGAAGATTCTGAAGTATATGTGTGGAAGCATGAAGATCATAGAAGTGCATGCAATGGAAAATTCAAAACTATGCTAGTTACTCGTGCTCACGAGCACTTCAACTGCAAAGATGTTTCAGTAGCAATACCATGGAATTGTACCGTCAAAGGTGATCCTCCGCTAGTGCCAGTGCCTTCCAAAAAGCATTCAAAACGTTCTCTGGGAGGTTCTATTGGTGGGGAAGAAACACCATCGCCATCTTCTGCAAATGGTAGTAAGAAAACTCTTCCACCCCTTCCCAGGAAAAGTATTAGCCTTAACTCAGAAGGAGCTTCAAATTCCCCTAGGGAAGAACTTGCGGCAAATTTGCATGCAGAATCAGGACTTGGAGATTCATTTGGTAACAGTAAAAGAACGATACCTCAGTCTCCAATGAAAGATAATTGCCACACCGCAGAGGAAGATGACCTTGAAGCATTTTCTCGCACAGATTCAGGATTTAGTGCTTCTTTTAGAACTGCATCATCCTCATCTAGGTTTAGTGATGCACTTTCTTCAAGTGGATCATTTTCTTCATCTTATTCATTATTGGACAGTGGCCACATTTCCTCCACGGTTGTTCCTACGGCATGGGGTTTGGTAATTGTGACAGCTGGGTTAGGAGGTGAGATCAGATGCTATCAAAATTTTGGGCTGCCAAGAAGGATTAGACAACCTCATCTTTTTGGAAGCTATAATAGTTTTACTAACACTTAG 2385 0.4629 MPVSETTTAVAVSTEKMFSENSSHQLVLVRSRSEGDIELFSLERSRREHFIGKCSKQRLTRTATEVFVHRAPPGTRNRAVLRDSDEAPQSKPKSAKVEDSGVRAFFLIKNLDTGKEFIVNECTESGAWNRLSDLQTGRQLTMDEFEKTVGKSRVVNELMRRSTRNENLSRKLTSSSYISRSLRMSKRRGVAFLKNIKGVASGFIGEREAVGNAAAATAAAEKSQWVRVRQSGKSHKEVSALHLCQELQGHDGSIWTIRFSLDGRFLASAGEDKVIHVWEVQECELMSLRIDEGSFTPIHPSLLASNDGSPFSPAAADKKKKGKFGTKKGPAIPDYVHVPETVFSLSDKPFCTFQGHLDDVLDLSWSRSKLLLSSSMDKTVRLWNLETRTCLYRFPHSDYVTCIQFNPLKDDVFISGSLDARVRLWSIPERHVVDWIDINDMVTALSFTPDGQGAIVGTHKGGCRTYSTKDCKLTQTGTIEISQKKSQLRKVTGFQFVPGKPSEILVTSADSRIRILEGSEVVQKYKGFRNANSQIAASFSPDGRYIISASEDSEVYVWKHEDHRSACNGKFKTMLVTRAHEHFNCKDVSVAIPWNCTVKGDPPLVPVPSKKHSKRSLGGSIGGEETPSPSSANGSKKTLPPLPRKSISLNSEGASNSPREELAANLHAESGLGDSFGNSKRTIPQSPMKDNCHTAEEDDLEAFSRTDSGFSASFRTASSSSRFSDALSSSGSFSSSYSLLDSGHISSTVVPTAWGLVIVTAGLGGEIRCYQNFGLPRRIRQPHLFGSYNSFTNT 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15019g00002 794 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Vium15019g00002 794 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Vium15019g00002 794 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Vium15019g00002 794 SUPERFAMILY WD40 repeat-like 241 562 IPR036322 GO:0005515
Vium15019g00002 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 538 559 IPR001680 GO:0005515
Vium15019g00002 794 MobiDBLite consensus disorder prediction 71 96 - -
Vium15019g00002 794 MobiDBLite consensus disorder prediction 601 692 - -
Vium15019g00002 794 MobiDBLite consensus disorder prediction 644 658 - -
Vium15019g00002 794 Gene3D - 331 602 IPR015943 GO:0005515
Vium15019g00002 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 393 IPR001680 GO:0005515
Vium15019g00002 794 MobiDBLite consensus disorder prediction 79 96 - -
Vium15019g00002 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 281 - -
Vium15019g00002 794 MobiDBLite consensus disorder prediction 623 637 - -
Vium15019g00002 794 ProSitePatterns Trp-Asp (WD) repeats signature. 266 280 IPR019775 -
Vium15019g00002 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 387 - -
Vium15019g00002 794 MobiDBLite consensus disorder prediction 675 689 - -
Vium15019g00002 794 Gene3D - 192 311 IPR015943 GO:0005515
Vium15019g00002 794 PANTHER WD REPEAT DOMAIN 44 26 776 IPR040324 -
Vium15019g00002 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 427 - -
Vium15019g00002 794 Pfam WD domain, G-beta repeat 349 384 IPR001680 GO:0005515
Vium15019g00002 794 Pfam WD domain, G-beta repeat 245 278 IPR001680 GO:0005515
Vium15019g00002 794 Pfam WD domain, G-beta repeat 389 426 IPR001680 GO:0005515
Vium15019g00002 794 Pfam WD domain, G-beta repeat 525 559 IPR001680 GO:0005515
Vium15019g00002 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 288 IPR001680 GO:0005515
Vium15019g00002 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 427 IPR001680 GO:0005515
Vium15019g00002 794 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Vium15019g00002 794 SMART WD40_4 518 559 IPR001680 GO:0005515
Vium15019g00002 794 SMART WD40_4 732 771 IPR001680 GO:0005515
Vium15019g00002 794 SMART WD40_4 346 384 IPR001680 GO:0005515
Vium15019g00002 794 SMART WD40_4 481 517 IPR001680 GO:0005515
Vium15019g00002 794 SMART WD40_4 240 279 IPR001680 GO:0005515
Vium15019g00002 794 SMART WD40_4 387 426 IPR001680 GO:0005515
Vium15019g00002 794 SMART WD40_4 428 467 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15019g00002 Vium-Chr15019 5755 15045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15019g00002 345 556 U-box Gene Family AT2G33340 25.000 1.75e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15019g00002 K20241 - gmx:100779364 1050.04