Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15015g00001 ATGGAGGAAGCATTGCGTCGTCTTAACGGAGTCACGCCCACTCAAGAACCCGACGTCGTTTCAGACCCTCACCCCAAGAAGTGTGCTGCCAAGCGCACCTCGCGTGACACCGCCAACTCCGGCACCGCCATGCGCTACCGTGGAGTCCGCCGCCGCCCCTGGGGTCGCTACGCTGCTGAGATCCGTGACCCGCAATCTAAGGAGCGGCGCTGGTTGGGCACTTTTGACACGGCGGAGGAGGCTGCCTGTGCCTACGACTGCGCCGCCCGAGCTATGAGAGGTGTCAAGGCCCGCACCAACTTCGTCTACCCGGACGCGGCTGATCCCCATCTCTTCCACCCCTTTAACCTACCCAAGCACTGCCACGTCGGCAGGTTTCCCCATAACACAAACTTGGGTAGTGACTTTCCTGCGAGTTCCCATAACAGCTCTTCATCCTCTACCTCCTCTCTCAATATGCTTCTCTTTCGTGACTTCCTTAACTCTTCTTCTAACCCGTGTCTGCTTTCTTCTGCTTCTTCTCAGCAGTTTCATGACAGTAAATCCGCTAGTTATGTGAACCCTTCTTCTTCCACTCTATCTCCTACTGCTACTAACTATCTCCACGGTTGTTGTGTCGGCAACGCTGATAACTACCAGAACACTGTTAGTGCCAATCATGGAGTTGAAGTAGCTGATGTTATTGATGAAGACTCCGACTTTTTCCCGCGTGAATCTTCGGATTCTGGGCTGCTGGAAGAGATAGTTCATAAGTTCTTGCCGAAATCGAAGCCTAAAGTGGAGACTTCGACTTTGAGTCAGTCTCTTCCCGAGGTTCCTCAACAGATATTTGATCATGTGGTTGTTTCTGCTAGCAAGGGTTATGGGGATTCCAGGATGAGGGTTCCCAAGGTTGAAGGTTTTGGTGTCTGTCATGATGCTCCCATGCAGCAATTTGAAGCTCTTAGTGGTTTTAATGCTATGCATGGGATGACCTCTATCCAGAGAGACAATCAGCTTATGTTGAATCACATTCCAGGATTCTCCAGCATTGAAGATTATCTTCAGTATTCCGAACTTTTTAATTCCTTTGCGACCAGGATGCAAAATGCTTAA 1095 0.5059 MEEALRRLNGVTPTQEPDVVSDPHPKKCAAKRTSRDTANSGTAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGVKARTNFVYPDAADPHLFHPFNLPKHCHVGRFPHNTNLGSDFPASSHNSSSSSTSSLNMLLFRDFLNSSSNPCLLSSASSQQFHDSKSASYVNPSSSTLSPTATNYLHGCCVGNADNYQNTVSANHGVEVADVIDEDSDFFPRESSDSGLLEEIVHKFLPKSKPKVETSTLSQSLPEVPQQIFDHVVVSASKGYGDSRMRVPKVEGFGVCHDAPMQQFEALSGFNAMHGMTSIQRDNQLMLNHIPGFSSIEDYLQYSELFNSFATRMQNA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15015g00001 364 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Vium15015g00001 364 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Vium15015g00001 364 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Vium15015g00001 364 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Vium15015g00001 364 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Vium15015g00001 364 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Vium15015g00001 364 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vium15015g00001 364 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Vium15015g00001 364 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 198 - -
Vium15015g00001 364 MobiDBLite consensus disorder prediction 1 46 - -
Vium15015g00001 364 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15015g00001 Vium-Chr15015 37870 39490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15015g00001 1 255 AP2-EREBP Transcription Factor Family AT1G24590 39.502 2.43e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium15015g00001 AP2 6.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15015g00001 - - aprc:113860142 418.698