Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14g00003 ATGGAGCCATCCTCGATCCCCCCACCGCAAGCTCCGCCAGCCACCGCCGTCCCGTTCCCGGCCGACACCAACGACCACCTCCCGGCGCCCATTGCAGAGCCGCCGTCAAATCACCCGCCCTACGCCGAGATGATATACACCGCAATCGAGGCGCTGAAGGAGAAAGACGGTTCGAGCAAGAAGGCGATAGGGAAGTACATGGAGCAAGTTTACAAGGACCAGCTTCCTCCGAATCACTCCACCTTGTTGACTCAGCACTTGACTCGGATGAAGACCAGTGGAATGCTCGTCATGGTGAAGAAGTCCTACGCGCTTCCTAGATCTGCTGCTGCAGCTGCCACTGCTGCTGCGGAGGAACCTGTGCCTGTGCCCTCTCCTTCAACCCTTCCCAGGCCCAGAGGTCGGCCCCGAAAGGCCCAAACCCCTGTCCACAACCTTCCCCAGCCTCTGGCTCAGGACCAGGACGCTGTAATCCCATCGGTTCAGCAGAATGCTGAACCAGTCTGGGCGGCGCTTGGGCTTGCTGACGAGCCTGTGCAAGCTGAGACCCCAAAGAAGCGTCCTGGCCGACCGAAGAAATTGGCCACTGGAGCCCCTGGAACGGGGCGGAGAGGCCGTCCTGTTGGCTCTGGCAAAGGCCCGGGTCGACCTCCTAAGCCCAAATCCATTGCTTCAGACACTTCTCTTTCTGCCTCTGCAGGGTCGAAGAGACGCCCGGGCCGCCCGCCTAAGAATCAGACCCAAGCAACTCAAATTCCATTTGCTCCATCTACACCTACTGCTGGTGCGGATGCCGGTGCCGGTGCCGAGGCTGGGGCTGTTTTGCCGGTCTCAGAGCCTGTGGAAGAACAGGCTCCTGCAGGTGATGGAATTATACTCGGGCCTAGAGTCCGTGGTCGACCGAAGAAGTTTGCTGATGAGATGATTTCCTCCGGCCGAGGCAGGGGAAGGGGTCGTGGACGAGGGCGTGGGCGTGGGCGTGGTGGTGGTTTGCAGTTCGCCAGACCTGGAGTTAGGTCCGTTGGCCGCCCGAGGAAGGGGTCAACTTTTGCTGGATCTCCACCAAATGCTGCTCATGAAGAACTCAAAAGGAAGCTGGAACACTTTCAATCGAAAGTGAAGGAATCCCTGGCAGTGATTAAGCCTCATTTTAACCATCAAAGTCCTGCCACTGCAATTGCAGCTATTCAAGATTTGGAAGAGCTGGGAACTATGGACCTCAATGCACCACTAAGGGATGAAACAATTCCTCTGCAACAGGAGGAGCAGCCACCACAGGCGCCGCAGCCAGTACAGGCGGCTCCACCACAGCAGCAGCCACCTCTGCCACACCTGGCACCAGCACCACTGCAACCTCAGACACAGCTATTTCAGCAGCCATTTCCCTCATTTCAGCTGCAGCAGCCGCCATTCCATCTTCAGCAGCCACCGCTGCCGTTCCAGCAGCCACCGCAGCAGCACCAGCTATTCCAGGCACCCCCATCGCACCAACAGTTTCATCCATAG 1506 0.5843 MEPSSIPPPQAPPATAVPFPADTNDHLPAPIAEPPSNHPPYAEMIYTAIEALKEKDGSSKKAIGKYMEQVYKDQLPPNHSTLLTQHLTRMKTSGMLVMVKKSYALPRSAAAAATAAAEEPVPVPSPSTLPRPRGRPRKAQTPVHNLPQPLAQDQDAVIPSVQQNAEPVWAALGLADEPVQAETPKKRPGRPKKLATGAPGTGRRGRPVGSGKGPGRPPKPKSIASDTSLSASAGSKRRPGRPPKNQTQATQIPFAPSTPTAGADAGAGAEAGAVLPVSEPVEEQAPAGDGIILGPRVRGRPKKFADEMISSGRGRGRGRGRGRGRGRGGGLQFARPGVRSVGRPRKGSTFAGSPPNAAHEELKRKLEHFQSKVKESLAVIKPHFNHQSPATAIAAIQDLEELGTMDLNAPLRDETIPLQQEEQPPQAPQPVQAAPPQQQPPLPHLAPAPLQPQTQLFQQPFPSFQLQQPPFHLQQPPLPFQQPPQQHQLFQAPPSHQQFHP 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14g00003 501 SMART h15plus2 35 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium14g00003 501 MobiDBLite consensus disorder prediction 405 501 - -
Vium14g00003 501 Pfam linker histone H1 and H5 family 38 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium14g00003 501 Coils Coil 359 379 - -
Vium14g00003 501 SMART AT_hook_2 236 248 IPR017956 GO:0003677
Vium14g00003 501 SMART AT_hook_2 185 197 IPR017956 GO:0003677
Vium14g00003 501 SMART AT_hook_2 338 350 IPR017956 GO:0003677
Vium14g00003 501 SMART AT_hook_2 211 223 IPR017956 GO:0003677
Vium14g00003 501 SMART AT_hook_2 295 307 IPR017956 GO:0003677
Vium14g00003 501 SMART AT_hook_2 130 142 IPR017956 GO:0003677
Vium14g00003 501 MobiDBLite consensus disorder prediction 241 257 - -
Vium14g00003 501 MobiDBLite consensus disorder prediction 484 501 - -
Vium14g00003 501 PANTHER HISTONE H1 17 246 - -
Vium14g00003 501 CDD H15 35 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium14g00003 501 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 37 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium14g00003 501 MobiDBLite consensus disorder prediction 299 314 - -
Vium14g00003 501 MobiDBLite consensus disorder prediction 451 471 - -
Vium14g00003 501 MobiDBLite consensus disorder prediction 114 146 - -
Vium14g00003 501 MobiDBLite consensus disorder prediction 1 16 - -
Vium14g00003 501 SUPERFAMILY "Winged helix" DNA-binding domain 34 116 IPR036390 -
Vium14g00003 501 Gene3D - 34 119 IPR036388 -
Vium14g00003 501 FunFam Histone H1.2 34 115 - -
Vium14g00003 501 PRINTS AT-hook-like domain signature 209 219 IPR017956 GO:0003677
Vium14g00003 501 PRINTS AT-hook-like domain signature 130 140 IPR017956 GO:0003677
Vium14g00003 501 PRINTS AT-hook-like domain signature 183 194 IPR017956 GO:0003677
Vium14g00003 501 PRINTS Histone H5 signature 125 139 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium14g00003 501 PRINTS Histone H5 signature 51 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium14g00003 501 PRINTS Histone H5 signature 24 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium14g00003 501 PRINTS Histone H5 signature 181 200 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium14g00003 501 MobiDBLite consensus disorder prediction 428 448 - -
Vium14g00003 501 MobiDBLite consensus disorder prediction 175 361 - -
Vium14g00003 501 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14g00003 Vium-Chr14 28960 34290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14g00003 44 109 Single Myb Histone (SMH) Gene Family AT1G49950 39.394 4.14e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14g00003 - - vun:114182142 648.277