LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium14g00002	ATGGATCGTAACAAAAAGGGAACAGGGGAGGCAGAGTTTTTTACTGAGTATGGAGAGGCAAGTAGGTATGACATCCTGGAAGTGATTGGAAAAGGGAGTTACGGTGTTGTGTGTTCTGCTGTTGACAGTCATAATGGGGAAAAAGTTGCAATAAAGAAAATCAATGATGTTTTCGAGCATGTGTCAGATGCCACACGGATCCTAAGAGAAATAAAACTCCTTCGTTTGCTTCGACATCCTGATATAGTTGAGATAAAGCACATAATGCTTCCTCCCTCCCGACGAGAGTTCAGGGATGTCTATGTTGTGTTTGAGTTGATGGAGTCTGATCTTCATCAAGTGATTAAGGCAAACGATGATCTTAGCCCTGAGCACTATCAATTTTTCTTGTACCAACTTCTTAGAGGCCTCAAATTTATACACACAGCAAATGTGTTTCATCGTGATTTGAAGCCAAAAAATATTCTAGCTAATGCTGATTGCAAACTAAAAATATGTGATTTCGGACTTGCTCGAGTTTCATTTAATGAGGCTCCGTCAGCTATATTCTGGACCGACTATGTTGCAACCCGGTGGTATCGTGCACCTGAACTATGCGGCTCTTTTTTCTCAAAATATACTCCCGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGGAAGCCATTGTTTCCAGGAAAAAATGTAGTGCACCAATTGGATCTCATAACTGACCTGCTTGGTACTCCTCCTACTGAAACCATTTCTAAGATTCGAAATGAGAAGGCTAGAAGGTACCTTGGTAGCATGAGGAAAAAACAACCTATTCCATTCACCAAAAAATTTCCAAATGTAGATCCTTTGGGTCTTCATTTACTGGAGCGATTACTTGCATTTGATCCTAAAGATCGTCCAGCAGCTGAAGAGGCACTAAGTGACCCTTATTTCAATGGTTTGGCCAATGTGGACCGTGAACCATCCACTCAACCCATTTCAAAGCTGGAGTTTGAGTTTGAGAGGAGAAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGATTTTAGAGTATCATCCCCAGATGCTCCAAGAATATCTTCGCGGTGGAGAACAAACTAGCTTCATGTATCCAAGTGGGGTTGATCGATTCAAGCGACAGTTTGCTCATCTTGAGGAGCATTCTGGCAAAGGTGAACGAGGCACTCCATTGTTGAGGCACCATGCCTCCTTGCCTAGAGAGCGAGTTCCAGCTCCCAAGGAAGAAAATAATCAAAATGATGATGGTGAAAATCCAACTGCAGCAGTTGATGAGTCAGATTCTGGAAATCCAGATGCACAAAACGGACCCTCCAAGCCAAACTGCAGTGCACGTAGCCTATTGAAGAGTGCCAGCATTAGTGGTTCAAAGTGTATAGATGTGAAAAAAAGCAATGATCAAGAGGAGGAGCCACTTACAGAGGTCAGTGATGAGACTCTGGATGAGTTGACAAAGGTTGCTTCCCTGCATACTTGA	1512	0.4239	MDRNKKGTGEAEFFTEYGEASRYDILEVIGKGSYGVVCSAVDSHNGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDVYVVFELMESDLHQVIKANDDLSPEHYQFFLYQLLRGLKFIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNEAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLITDLLGTPPTETISKIRNEKARRYLGSMRKKQPIPFTKKFPNVDPLGLHLLERLLAFDPKDRPAAEEALSDPYFNGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGEQTSFMYPSGVDRFKRQFAHLEEHSGKGERGTPLLRHHASLPRERVPAPKEENNQNDDGENPTAAVDESDSGNPDAQNGPSKPNCSARSLLKSASISGSKCIDVKKSNDQEEEPLTEVSDETLDELTKVASLHT	503

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium14g00002	503	SMART	serkin_6	23	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium14g00002	503	MobiDBLite	consensus disorder prediction	392	426	-	-
	Vium14g00002	503	FunFam	Mitogen-activated protein kinase	338	360	-	-
	Vium14g00002	503	SUPERFAMILY	Protein kinase-like (PK-like)	19	319	IPR011009	-
	Vium14g00002	503	MobiDBLite	consensus disorder prediction	472	491	-	-
	Vium14g00002	503	ProSitePatterns	Protein kinases ATP-binding region signature.	29	53	IPR017441	GO:0005524
	Vium14g00002	503	Pfam	Protein kinase domain	23	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium14g00002	503	FunFam	Mitogen-activated protein kinase	12	117	-	-
	Vium14g00002	503	Gene3D	Transferase(Phosphotransferase) domain 1	109	337	-	-
	Vium14g00002	503	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	22	366	-	-
	Vium14g00002	503	ProSiteProfiles	Protein kinase domain profile.	23	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium14g00002	503	Gene3D	Phosphorylase Kinase; domain 1	38	360	-	-
	Vium14g00002	503	MobiDBLite	consensus disorder prediction	427	457	-	-
	Vium14g00002	503	MobiDBLite	consensus disorder prediction	392	457	-	-
	Vium14g00002	503	ProSitePatterns	MAP kinase signature.	58	161	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
	Vium14g00002	503	FunFam	Mitogen-activated protein kinase	109	337	-	-
	Vium14g00002	503	CDD	STKc_TDY_MAPK	22	359	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium14g00002	Vium-Chr14	4865	13427	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium14g00002	10	503	MAP Kinase Gene Family	AT3G18040	81.746	0.0	822

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Vium14g00002		Pkinase	3.1e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium14g00002	-		-	gmx:100776784	898.656