Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium149g00022 ATGTTAGTCATGGAAGATAGGGATCACTGTTGTTCCAACGATTCAACCGTCACCAACAGAAGAAGAAGAAGCAGAAGCCCGACAACAGCCTTGGAGAAATCGAAGAAGCAGCGCTGCGAGAAACCGTACCGAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATCAGAGAGCCGAACAAGAGGTCAAGGATTTGGTTGGGTTCTTACACGACGCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTTTTCTACCTCCGAGGTCCTTCCGCGCGCCTCAATTTCCCCGAACTTTTGTTCCAGGACGAGGTCGACGGCGCCAACGATGACGATTCCGTGAACATGTCCGCTGATTCCATTCGCCGCAAAGCCACGCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCTCCATCACGCGCCCTCGCACAACCCCACTCTAATCTCTCTCAAACCCGACTTGAACGAGTTCCCAAAACTCGAAGACCTTCAAGATTGA 513 0.5536 MLVMEDRDHCCSNDSTVTNRRRRSRSPTTALEKSKKQRCEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDEVDGANDDDSVNMSADSIRRKATQVGARVDALQTALLHHAPSHNPTLISLKPDLNEFPKLEDLQD 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium149g00022 170 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Vium149g00022 170 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Vium149g00022 170 PRINTS Ethylene responsive element binding protein signature 81 101 IPR001471 GO:0003700|GO:0006355
Vium149g00022 170 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Vium149g00022 170 Pfam AP2 domain 43 91 IPR001471 GO:0003700|GO:0006355
Vium149g00022 170 FunFam Ethylene-responsive transcription factor 2 41 100 - -
Vium149g00022 170 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Vium149g00022 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 24 168 - -
Vium149g00022 170 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Vium149g00022 170 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Vium149g00022 170 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium149g00022 Vium-Chr149 165881 166784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium149g00022 40 141 AP2-EREBP Transcription Factor Family AT5G67190 71.698 2.14e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium149g00022 AP2 2.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium149g00022 K09286 - gmx:547642 237.269