Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium149g00018 ATGAACAATTCGCTTTTTCTCCACAACGCAAACGCAATCCACTTCACTTTCCACTCTGCATTTTCACAAACACAACGCGGGCACGTTGCTTCCAACAAGCACTTATCTCAGCGTTACCCACGCATCCAATGCTGCTGCGTCGAAATCGACATGGTGAAGAACTCCCAAGGAATTTACGCCCCCAAAAGCGACAAGGTCGTTGTTCTCTGGGACCTCGACAACAAACCCCCTCGTGGGCCTCCATACAACGCCGCCGTTTCGCTCAAAACCCTCGCTTCCCGCTTCGGCGAGGTGACTGACTTCTCCGCCTACGCCAACCGCCACGCCTTCGTCCACCTCCCCCAGTGGGTCCTACACGAGCGCCGGGAACGCAGGAGCCTCGACATCCTCGAACGGAAGGGTGTGGTCACACCCTCGGAGCCCTACACGTGCGGGGTGTGTGGGCGCAAGTGTAAGACCCACATGGACCTGAAGAAGCACTTCAAGCAGCTGCACCAGCGCGAGCGTGAGAAGAAGCTGAACCGGTTGAAGTCGCTGAAGGGGAAGAAGAAACGGGACCGTTTCAAGGAACGGTTTTTGCGCGGGAATCATAAGTATAATGAGGCGGCGAGGACGCTGCTGGTTCCGAAGGTGGGGTACGGGCTGGCGGCGGAGCTGCGGCGGGCGGGGGTGTTTGTTAAGACGGTGGAGGATAAACCGCAGGCGGCGGATTGGGCCCTTAAGAGGCAGATGGTTCATTCCATGAGTAGAGGGATTGATTGGCTATTTTTGGTTTCGGATGATTCGGATTTTTCGGATATGTTGAGGAGGGCGAGGGAGGCGGATTTGGGGACTGTGGTGGTGGGTGATTGGGATAGGGCTTTGGGGAGGCATGCGGATTTGTGGGTGCCATGGAGTGGGGTTGAGAATGGGGAAGTGGAGTTGGTGCCCGAGATGAAGAAGAGAAGAGAACATGGTTTTCTGAATGATGACGATGATGATGATCACCATGATCGTGGTGATTGGGGAGGTTTGAATGAGGATGAGGAATTGGGGCAAGACTTTATGTTGCTGCATAGTGAGGATGAGGATGAAGATGAGGGAAACTATTATTAGATGATGAAGAAGAAGAAGAGGAAGACGGGTTGTATATATTATGATTCTTTTTTGGATGGGAAACAATTTGCCACCGCAATTTCGGCTGCAATGTCAAGGATTTTTTGGTGTTTGAGGCTGCAATTGTGA 1224 0.5294 MNNSLFLHNANAIHFTFHSAFSQTQRGHVASNKHLSQRYPRIQCCCVEIDMVKNSQGIYAPKSDKVVVLWDLDNKPPRGPPYNAAVSLKTLASRFGEVTDFSAYANRHAFVHLPQWVLHERRERRSLDILERKGVVTPSEPYTCGVCGRKCKTHMDLKKHFKQLHQREREKKLNRLKSLKGKKKRDRFKERFLRGNHKYNEAARTLLVPKVGYGLAAELRRAGVFVKTVEDKPQAADWALKRQMVHSMSRGIDWLFLVSDDSDFSDMLRRAREADLGTVVVGDWDRALGRHADLWVPWSGVENGEVELVPEMKKRREHGFLNDDDDDDHHDRGDWGGLNEDEELGQDFMLLHSEDEDEDEGNYYYXMMKKKKRKTGCIYYDSFLDGKQFATAISAAMSRIFWCLRLQL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium149g00018 408 Gene3D - 59 299 - -
Vium149g00018 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Vium149g00018 408 MobiDBLite consensus disorder prediction 318 340 - -
Vium149g00018 408 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Vium149g00018 408 Coils Coil 405 408 - -
Vium149g00018 408 Coils Coil 162 182 - -
Vium149g00018 408 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 32 359 - -
Vium149g00018 408 CDD PIN_LabA-like 152 283 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium149g00018 41 363 C2H2 Transcription Factor Family AT5G52010 65.579 2.79e-153 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium149g00018 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium149g00018 - - vvo:131596395 474.167