Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium149g00008 ATGAGTAGCATGCCTGCAAAATTGTTGGTCACAATTTTGTACATCTTCCTGGTGTCTCTTCCTGTGTACATGTCACCACATCATGTTAACACAGACACAAAGAATCTCAGAAGTAGTAGCAGTGGCCACAGGAGCAAAGGTACTGGTGGTGGTGGTGGCTCAGCCAAAGGTTGCAACCACAGCAACACCACCCCATGTAAAAAATCTACTACCATTCAAGCAGTTCCAGCTTCACCCCCTCTTGTTTTTGCAGACCAAAGACTTCAAGTAGTGTATCCAGTAATCCAAAAGTTCAAATCTTCCATCACTTCTGATCCTCTGGGGGTGACCAACACTTGGGTTGGATCAGACATATGCAGCTACAGAGGCTTCTACTGTGACACTCCTCCTGACAACACTTCTGCCACTGCTTTGGCCTCTGTTGACTTCAATGGTTTTCAGCTTGCTGCTTCCACCCTTGATGGCTTCATTGATAACCTCCCTGATATTGCTCTCTTCCATGCCAATTCCAACAGTTTTGGTGGCACAATCTCACCCCAAATAGCCAAACTCCCTTACCTATATGAGCTTGATGTTAGCAACAATCAGTTATCTGGTCCATTTCCCTCTGCTGTCCTGGGCATGACTGGTTTAACATTCTTGGACTTGAGGTTCAACTTTTTCTCTGGGGCAGTGCCACCACAGATATTCATACAGAACCTCCAAGTCCTTTTCATAAACAACAACATCTTCACTCAAGGGTTGCCTGATAACTTAGCCACCACTCAGATTCTCTTACTCACCTTAGCAAACAACAAGTTCATGGGTCCAATCCCAAGAAGTCTTCCCAAGGCTTTGGCCTCTCTAAGTGAAGTGTTACTACTTAACAACCAGTTAACAGGTTGTTTGCCTTATGAGATTGGTTTTCTTCAAGAGTCCACAGTGTTTGATGCTGGGAACAACCAATTGACAGGCCCTTTGCCTTTATCTTTGAGCTGTCTGCAGAAGGTGGAGGTGCTCAATTTGGGTGGTAATCTTTTGTATGGCATGGTGCCAGAAGTGGTGTGTGCAGGGTTGGTGAATTTGGTCAACTTTTCATTATCAGATAACTATTTCACACATGTGGGGCCATTCTGTAGGATGCTGATTCAGAGAGGGGTTCTTGATGTTAGCAACAATTGTATTCCTGATCTTCCCTTTCAGAGATCAGTGTTTGAGTGTGCTGAGTTCTTTGCAACACCAAGGATGTGTCCCTTCATCTGGCTTTATAGCCTCATCCCTTGTAAGCTTCCTTTTCAAAATCCCATTCCTTAG 1293 0.4462 MSSMPAKLLVTILYIFLVSLPVYMSPHHVNTDTKNLRSSSSGHRSKGTGGGGGSAKGCNHSNTTPCKKSTTIQAVPASPPLVFADQRLQVVYPVIQKFKSSITSDPLGVTNTWVGSDICSYRGFYCDTPPDNTSATALASVDFNGFQLAASTLDGFIDNLPDIALFHANSNSFGGTISPQIAKLPYLYELDVSNNQLSGPFPSAVLGMTGLTFLDLRFNFFSGAVPPQIFIQNLQVLFINNNIFTQGLPDNLATTQILLLTLANNKFMGPIPRSLPKALASLSEVLLLNNQLTGCLPYEIGFLQESTVFDAGNNQLTGPLPLSLSCLQKVEVLNLGGNLLYGMVPEVVCAGLVNLVNFSLSDNYFTHVGPFCRMLIQRGVLDVSNNCIPDLPFQRSVFECAEFFATPRMCPFIWLYSLIPCKLPFQNPIP 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium149g00008 430 MobiDBLite consensus disorder prediction 32 47 - -
Vium149g00008 430 SUPERFAMILY L domain-like 96 388 - -
Vium149g00008 430 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 50 421 - -
Vium149g00008 430 Gene3D Ribonuclease Inhibitor 257 400 IPR032675 -
Vium149g00008 430 MobiDBLite consensus disorder prediction 32 62 - -
Vium149g00008 430 Gene3D Ribonuclease Inhibitor 93 256 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium149g00008 Vium-Chr149 75629 77955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium149g00008 73 407 Leucine-rich Repeat extension Gene Families AT3G24480 41.791 4.13e-83 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium149g00008 - - pvu:PHAVU_001G024400g 743.806