Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1498g00028 ATGGTGTCAACACACGACAAGAAGACGAACCTCGCCAGACTCATCATCCCTTCTTCTTCATCTTCCCCATCCCCATCCCCATCCATCACAAGCCCACATGTCATTCACAGTAGGTCCCACTCCTTTGTGGGTCCCTCCCCGCGCTTCAATCCCTCCTCAACCCCTCTCTTCTTCCTCCAAGAGGACGACGACGAAGACGAAGAAAAGGAACCTCTTTCTTCTGACCCTGTTAAGATTGGACCTTCCGATTTTCATATTCTCCGTGTCGTAGGGCAGGGTGCCTTTGGCAAGGTCTTTCTCGTCAGAAAAAAAGGAAATTGCTTCGATGGTGATGGTGATGGGGTCTTCGCCATGAAGGTCATGAGAAAGGACACCATTATAAAGAAAAACCACGTTGATTACATGAAAGCGGAGAGGGATATTCTCACTAAAGTCCTTCACCCTTTCATTGTTCAGCTACGTTACTCTTTTCAGACCAATTCTAAGTTATATTTGGTGTTGGATTTTGTAAACGGAGGGCATCTCTTCTTTCATCTGTATCGCCAGGGTATCTTCAGTGAGGATCAGGCAAGGCTTTACACTGCTGAGATAGTGTCTGCAGTTTCACATCTTCACAGCAAAGGCATCGTGCATCGGGATCTTAAGCCTGAAAACATTCTAATGGACTCTCACGGGCATGTCATGCTGACTGATTTTGGAATGTCAAAAGAGATTGATGAATTGGGAAGATCCAACTCTCTTTGTGGCACCGTGGAATATATGGCTCCTGAAATTCTTCTGGCTAAAGGCCATAACAAGGATGCGGATTGGTGGAGTGTTGGTATCCTGTTGTATGAAATGCTAACAGGGAAGGCACCGTTTACACACACTAACAGAAAGAAACTTCAGGAGAAAATTATTAAAGAGAAAGTTAAACTTCCACCATTCCTTACCAGTGAAGCTCATTCATTACTCAAAGGATTGCTGCAAAAGGATCCAACAACAAGGTTAGGACATGGGCGAAATGGAGATGAGCAGATCAAAAGTCATAAATGGTTTAGGTCAATCAATTGGAAAAAATTGGAGGCAAGAGAACTGGAACCAAAGTTTAAACCAGATGTGTCTGGGAAAGACTGTACTGCTAATTTTGACAAATGTTGGACAGCAATGCCCCCTAATGACTCACCAGCATCCACACCTACAGCAGGTGACCATTTCCAGGGCTATACTTATGTGGCGCCCAACCCTTGGCTTTCATCTGGTTCACTACAATGA 1254 0.4474 MVSTHDKKTNLARLIIPSSSSSPSPSPSITSPHVIHSRSHSFVGPSPRFNPSSTPLFFLQEDDDEDEEKEPLSSDPVKIGPSDFHILRVVGQGAFGKVFLVRKKGNCFDGDGDGVFAMKVMRKDTIIKKNHVDYMKAERDILTKVLHPFIVQLRYSFQTNSKLYLVLDFVNGGHLFFHLYRQGIFSEDQARLYTAEIVSAVSHLHSKGIVHRDLKPENILMDSHGHVMLTDFGMSKEIDELGRSNSLCGTVEYMAPEILLAKGHNKDADWWSVGILLYEMLTGKAPFTHTNRKKLQEKIIKEKVKLPPFLTSEAHSLLKGLLQKDPTTRLGHGRNGDEQIKSHKWFRSINWKKLEARELEPKFKPDVSGKDCTANFDKCWTAMPPNDSPASTPTAGDHFQGYTYVAPNPWLSSGSLQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1498g00028 417 SUPERFAMILY Protein kinase-like (PK-like) 69 391 IPR011009 -
Vium1498g00028 417 Gene3D Transferase(Phosphotransferase) domain 1 170 365 - -
Vium1498g00028 417 SMART serkin_6 84 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1498g00028 417 FunFam Non-specific serine/threonine protein kinase 170 365 - -
Vium1498g00028 417 ProSitePatterns Protein kinases ATP-binding region signature. 90 119 IPR017441 GO:0005524
Vium1498g00028 417 ProSiteProfiles Protein kinase domain profile. 84 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1498g00028 417 ProSiteProfiles AGC-kinase C-terminal domain profile. 347 414 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium1498g00028 417 Pfam Protein kinase C terminal domain 367 404 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vium1498g00028 417 Gene3D Phosphorylase Kinase; domain 1 82 389 - -
Vium1498g00028 417 Pfam Protein kinase domain 84 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1498g00028 417 FunFam Non-specific serine/threonine protein kinase 82 192 - -
Vium1498g00028 417 MobiDBLite consensus disorder prediction 13 57 - -
Vium1498g00028 417 MobiDBLite consensus disorder prediction 1 57 - -
Vium1498g00028 417 SMART pkinase_C_6 347 406 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium1498g00028 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Vium1498g00028 417 PANTHER RIBOSOMAL PROTEIN S6 KINASE 60 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1498g00028 Vium-Chr1498 210119 213672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1498g00028 16 407 AGC Kinase Gene Family AT3G08720 59.762 4.69e-176 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vium1498g00028 Pkinase 1.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1498g00028 K04688 - gmx:100798259 724.161