Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1498g00027 ATGTCTCGTGCCTGCGCTGCTACAGACTCGGTTGCCTCCGGCGAGATCATGCTGTTTGGGGTTCGAGTGGTAGTCGATTCCATGAGAAAAAGCGTCAGCATGAACAACCTTTCACAGTACGAGCATAGGCACGACGCTAACAACAACAATAAAGATGTTCTCGCAGTTGGTTATGCCTCAGCCGATGACGCCGTTCCTCATAACACTGGCCGCCACCGTGAGCGGGAGCGCAAGCGAGGAGTTCCGTGGACAGAGGAAGAGCACAAACTGTTTTTGGTTGGGTTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTATGTGAAAACGCGAACTCCGACGCAGGTTGCGAGCCATGCTCAGAAGTACTTTCTCCGAAGAAGCAACCTGAATCGTCGTCGCCGTAGATCCAGCCTCTTCGACATCACCACCGACACGGTATCTGCAATTCCAATGGAGGAAGAACAGGTCCAGAATCAAGACACCCTGTTTCATCCGCAAGCAGTGTGCCCAGCAGTTCCTGAAACTAGCAAAAGTGGAATTCCAATGATGCCAGTGTATCAGTTTGGGATTGGTTCTGGGGCTATTGCAGTCCAAGGTGGGAAACCATTAGAAGAACTCACTCTGGGACAAGGAAACATAGAGCACAATGTGCCAATCAATCTGGTCCGTGCAATTCCTGTTGTTGCAGATCCTAAAGCATCCACAGTGTCGGATATCATCACCCCAAGTTCTAGTTCTGCTCTTGACCCACCCACACTGTCCTTGGGGCTAGCCTTCTCTTCTGACCAAAGGCAAACATCATCAAGACATTCTGCTTTACATGTCATGCCATGTTTCAGCAATGGAGATAGCACCATTAGTGTTGCTTAA 882 0.4966 MSRACAATDSVASGEIMLFGVRVVVDSMRKSVSMNNLSQYEHRHDANNNNKDVLAVGYASADDAVPHNTGRHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVQNQDTLFHPQAVCPAVPETSKSGIPMMPVYQFGIGSGAIAVQGGKPLEELTLGQGNIEHNVPINLVRAIPVVADPKASTVSDIITPSSSSALDPPTLSLGLAFSSDQRQTSSRHSALHVMPCFSNGDSTISVA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1498g00027 293 Gene3D - 81 133 - -
Vium1498g00027 293 ProSiteProfiles SANT domain profile. 78 131 IPR017884 -
Vium1498g00027 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 131 IPR017930 -
Vium1498g00027 293 SUPERFAMILY Homeodomain-like 77 132 IPR009057 -
Vium1498g00027 293 SMART sant 79 129 IPR001005 -
Vium1498g00027 293 FunFam transcription factor MYB1R1 81 132 - -
Vium1498g00027 293 CDD SANT 82 127 IPR001005 -
Vium1498g00027 293 ProSiteProfiles Myb-like domain profile. 75 127 IPR001005 -
Vium1498g00027 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 78 129 IPR006447 GO:0003677
Vium1498g00027 293 Pfam Myb-like DNA-binding domain 82 127 IPR001005 -
Vium1498g00027 293 PANTHER TRANSCRIPTION FACTOR KUA1 2 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1498g00027 Vium-Chr1498 199898 201865 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium1498g00027 Myb_DNA-binding 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1498g00027 - - gmx:780536 418.698