Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1498g00019 ATGACGGATTACTCCATGCCGGGGATGACAGGATACGAATTACTCAAGAAAATCAAGGAGTCTTCCGTGTTTAGAGAGATTCCAGTGGTTATCATGTCGTCGGAGAATGTATTGACTCGAATTGATAGGTGCCTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAACCTGTAAAATTGTCAGATGTAAGACGCTTGAAAGATTTCATCATGAAAGGGAAAGTGAAGGATGTTGAAAAAAAATCTCTCAAAAGAATGAGGTCAACTGATTGCAGTCCACCACTGTCTGCAACATACTCACCCATCTCTCTTCCATGCGATCCGTCACCATTATCCTCAAAGAAGGCTAGATTGTGA 354 0.4266 MTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCLEEGAEEFLLKPVKLSDVRRLKDFIMKGKVKDVEKKSLKRMRSTDCSPPLSATYSPISLPCDPSPLSSKKARL 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1498g00019 117 Pfam Response regulator receiver domain 2 63 IPR001789 GO:0000160
Vium1498g00019 117 SUPERFAMILY CheY-like 2 68 IPR011006 -
Vium1498g00019 117 MobiDBLite consensus disorder prediction 88 106 - -
Vium1498g00019 117 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 80 IPR045279 GO:0009736
Vium1498g00019 117 MobiDBLite consensus disorder prediction 80 117 - -
Vium1498g00019 117 Gene3D - 1 95 - -
Vium1498g00019 117 ProSiteProfiles Response regulatory domain profile. 1 70 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1498g00019 Vium-Chr1498 122052 123789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1498g00019 1 73 Response Regulator Gene Family AT3G48100 84.932 7.30e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1498g00019 Response_reg 3.6e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1498g00019 K14492 - gmx:100796843 202.216