Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1498g00018 ATGACGGATTACTCCATGCCGGGGATGACAGGATACGAATTACTCAAGAAAATCAAGCAGGAGTCTTCCGTGTTTAGAGAGATTCCAGTGGTTATCATGTCGTCGGAGAATGTATTGACTCGAATTGATAGGTGCCTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAACCTGTAAAATTGTCAGATGTAAGACGCTTGAAAGATTTCATCATGAAAGGGAAAGTGAAGGATGTTGAAAAAAAATCTCTCAAAAGAATGAGGTCAACTGATTGCAGTCCACCACTGTCTGCAACATACTCACCCATCTCTCTTCCATGCGATCCGTCACCATTATCCTCAAAGAAGGCTAGATTGTGA 357 0.4286 MTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEEFLLKPVKLSDVRRLKDFIMKGKVKDVEKKSLKRMRSTDCSPPLSATYSPISLPCDPSPLSSKKARL 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1498g00018 118 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 81 IPR045279 GO:0009736
Vium1498g00018 118 MobiDBLite consensus disorder prediction 81 118 - -
Vium1498g00018 118 Pfam Response regulator receiver domain 2 64 IPR001789 GO:0000160
Vium1498g00018 118 SUPERFAMILY CheY-like 2 69 IPR011006 -
Vium1498g00018 118 Gene3D - 1 96 - -
Vium1498g00018 118 MobiDBLite consensus disorder prediction 89 107 - -
Vium1498g00018 118 ProSiteProfiles Response regulatory domain profile. 1 71 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1498g00018 Vium-Chr1498 122052 123789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1498g00018 1 74 Response Regulator Gene Family AT3G48100 83.784 5.02e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1498g00018 Response_reg 2.8e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1498g00018 K14492 - gmx:100527518 207.994