Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1498g00017 ATGGCCATCACCGGTGAGATTTTCCGGCAAAACTTAACGGAATTGCTCGAGGAGTCTCCTTCTGGTTCGCCAGAGCTTCACGTTCTTGCCGTCGATGACAGCCTCGTTGATCGCAATGTCATCGAACGCTTGCTCAAGGTTTCTTCCTGCAAAGTGACGATTGTGGAGAGTGGAACGCGTGCTCTTCAGTATCTGGGCTTGGAAGGAGAGACCGGTTCTCTCGGGTTGGATAGTGCGAAGGTTAATCTCATAATGACGGATTACTCCATGCCGGGGATGACAGGATACGAATTACTCAAGAAAATCAAGGAGTCTTCCGTGTTTAGAGAGATTCCAGTGGTTATCATGTCGTCGGAGAATGTATTGACTCGAATTGATAGGTGCCTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAACCTGTAAAATTGTCAGATGTAAGACGCTTGAAAGATTTCATCATGAAAGGGAAAGTGAAGGATGTTGAAAAAAAATCTCTCAAAAGAATGAGGTCAACTGATTGCAGTCCACCACTGTCTGCAACATACTCACCCATCTCTCTTCCATGCGATCCGTCACCATTATCCTCAAAGAAGGCTAGATTGTGA 606 0.462 MAITGEIFRQNLTELLEESPSGSPELHVLAVDDSLVDRNVIERLLKVSSCKVTIVESGTRALQYLGLEGETGSLGLDSAKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCLEEGAEEFLLKPVKLSDVRRLKDFIMKGKVKDVEKKSLKRMRSTDCSPPLSATYSPISLPCDPSPLSSKKARL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1498g00017 201 CDD REC_typeA_ARR 28 149 - -
Vium1498g00017 201 Gene3D - 26 176 - -
Vium1498g00017 201 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 163 IPR045279 GO:0009736
Vium1498g00017 201 ProSiteProfiles Response regulatory domain profile. 27 154 IPR001789 GO:0000160
Vium1498g00017 201 SMART REC_2 26 150 IPR001789 GO:0000160
Vium1498g00017 201 Pfam Response regulator receiver domain 28 147 IPR001789 GO:0000160
Vium1498g00017 201 SUPERFAMILY CheY-like 25 150 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1498g00017 Vium-Chr1498 117330 119614 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1498g00017 5 157 Response Regulator Gene Family AT3G48100 70.513 3.10e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1498g00017 Response_reg 3.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1498g00017 K14492 - gmx:100796843 328.176