Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1498g00016 ATGGCCATCACCGGTGAGATTTTCCGGCAAAACTTAACGGAATTGCTCGAGGAGTCTCCTTCTGGTTCGCCAGAGCTTCACGTTCTTGCCGTCGATGACAGCCTCGTTGATCGCAATGTCATCGAACGCTTGCTCAAGGTTTCTTCCTGCAAAGTGACGATTGTGGAGAGTGGAACGCGTGCTCTTCAGTATCTGGGCTTGGAAGGAGAGACCGGTTCTCTCGGGTTGGATAGTGCGAAGGTTAATCTCATAATGACGGATTACTCCATGCCGGGGATGACAGGATACGAATTACTCAAGAAAATCAAGCAGGAGTCTTCCGTGTTTAGAGAGATTCCAGTGGTTATCATGTCGTCGGAGAATGTATTGACTCGAATTGATAGGTGCCTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAACCTGTAAAATTGTCAGATGTAAGACGCTTGAAAGATTTCATCATGAAAGGGAAAGTGAAGGATGTTGAAAAAAAATCTCTCAAAAGAATGAGGTCAACTGATTGCAGTCCACCACTGTCTGCAACATACTCACCCATCTCTCTTCCATGCGATCCGTCACCATTATCCTCAAAGAAGGCTAGATTGTGA 609 0.4631 MAITGEIFRQNLTELLEESPSGSPELHVLAVDDSLVDRNVIERLLKVSSCKVTIVESGTRALQYLGLEGETGSLGLDSAKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEEFLLKPVKLSDVRRLKDFIMKGKVKDVEKKSLKRMRSTDCSPPLSATYSPISLPCDPSPLSSKKARL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1498g00016 202 Pfam Response regulator receiver domain 28 148 IPR001789 GO:0000160
Vium1498g00016 202 SUPERFAMILY CheY-like 25 151 IPR011006 -
Vium1498g00016 202 Gene3D - 26 177 - -
Vium1498g00016 202 SMART REC_2 26 151 IPR001789 GO:0000160
Vium1498g00016 202 CDD REC_typeA_ARR 28 150 - -
Vium1498g00016 202 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 164 IPR045279 GO:0009736
Vium1498g00016 202 ProSiteProfiles Response regulatory domain profile. 27 155 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1498g00016 Vium-Chr1498 117325 119614 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1498g00016 5 158 Response Regulator Gene Family AT3G48100 70.064 1.67e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1498g00016 Response_reg 2.5e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1498g00016 K14492 - gmx:100527518 325.094