Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1498g00014 ATGGCCATCACCGGTGAGATTTTCCGGCAAAACTTAACGGAATTGCTCGAGGAGTCTCCTTCTGGTTCGCCAGAGCTTCACGTTCTTGCCGTCGATGACAGCCTCGTTGATCGCCATGTCATCGAACGCTTGCTCAAGGTTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGGAACGCGTGCTCTTCAGTATTTGGGCTTGGACGGAGAGACCGGTTCTCTCGGCTTGGATAGTGCGAAGGTTAATCTCATAATGACGGATTACTCCATGCCGGGGATGACAGGATACGAATTACTCAAGAAAATCAAGGAGTCTTCCGTGTTTAGAGAGATTCCAGTGGTGATCATGTCGTCGGAGAATGTTTTGACTCGAATTGATAGGTGTCTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCTGTAAAATTATCAGATGTAAGACGCTTGAAAGATTTCATCATGAAAGGGAAAGTGAAGGATGTTGAAAAAAAATCTCTCAAAAGAATGAGGTCAATTGATTGCAGTCCACCGCTGTCTGCAACATACTCAGCCATCTCTCTTCCATGCGATCCGTCACCATCATTGCTCTCACCATTATCCTCAAAGAAGGCTAGATTGTGA 621 0.4654 MAITGEIFRQNLTELLEESPSGSPELHVLAVDDSLVDRHVIERLLKVSSCKVTVVESGTRALQYLGLDGETGSLGLDSAKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCLEEGAEEFLLKPVKLSDVRRLKDFIMKGKVKDVEKKSLKRMRSIDCSPPLSATYSAISLPCDPSPSLLSPLSSKKARL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1498g00014 206 ProSiteProfiles Response regulatory domain profile. 27 154 IPR001789 GO:0000160
Vium1498g00014 206 CDD REC_typeA_ARR 28 149 - -
Vium1498g00014 206 SMART REC_2 26 150 IPR001789 GO:0000160
Vium1498g00014 206 Pfam Response regulator receiver domain 28 147 IPR001789 GO:0000160
Vium1498g00014 206 Gene3D - 26 175 - -
Vium1498g00014 206 SUPERFAMILY CheY-like 25 151 IPR011006 -
Vium1498g00014 206 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 158 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1498g00014 Vium-Chr1498 102551 104771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1498g00014 5 157 Response Regulator Gene Family AT3G48100 71.795 5.58e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1498g00014 Response_reg 1.6e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1498g00014 K14492 - gmx:100796843 314.694