Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1498g00013 ATGGCCATCACCGGTGAGATTTTCCGGCAAAACTTAACGGAATTGCTCGAGGAGTCTCCTTCTGGTTCGCCAGAGCTTCACGTTCTTGCCGTCGATGACAGCCTCGTTGATCGCCATGTCATCGAACGCTTGCTCAAGGTTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGGAACGCGTGCTCTTCAGTATTTGGGCTTGGACGGAGAGACCGGTTCTCTCGGCTTGGATAGTGCGAAGGTTAATCTCATAATGACGGATTACTCCATGCCGGGGATGACAGGATACGAATTACTCAAGAAAATCAAGCAGGAGTCTTCCGTGTTTAGAGAGATTCCAGTGGTGATCATGTCGTCGGAGAATGTTTTGACTCGAATTGATAGGTGTCTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCTGTAAAATTATCAGATGTAAGACGCTTGAAAGATTTCATCATGAAAGGGAAAGTGAAGGATGTTGAAAAAAAATCTCTCAAAAGAATGAGGTCAATTGATTGCAGTCCACCGCTGTCTGCAACATACTCAGCCATCTCTCTTCCATGCGATCCGTCACCATCATTGCTCTCACCATTATCCTCAAAGAAGGCTAGATTGTGA 624 0.4663 MAITGEIFRQNLTELLEESPSGSPELHVLAVDDSLVDRHVIERLLKVSSCKVTVVESGTRALQYLGLDGETGSLGLDSAKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEEFLLKPVKLSDVRRLKDFIMKGKVKDVEKKSLKRMRSIDCSPPLSATYSAISLPCDPSPSLLSPLSSKKARL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1498g00013 207 CDD REC_typeA_ARR 28 150 - -
Vium1498g00013 207 Gene3D - 26 176 - -
Vium1498g00013 207 SMART REC_2 26 151 IPR001789 GO:0000160
Vium1498g00013 207 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 159 IPR045279 GO:0009736
Vium1498g00013 207 Pfam Response regulator receiver domain 28 148 IPR001789 GO:0000160
Vium1498g00013 207 SUPERFAMILY CheY-like 25 152 IPR011006 -
Vium1498g00013 207 ProSiteProfiles Response regulatory domain profile. 27 155 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1498g00013 Vium-Chr1498 102548 104771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1498g00013 5 158 Response Regulator Gene Family AT3G48100 71.338 3.27e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1498g00013 Response_reg 1.3e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1498g00013 K14492 - gmx:100796843 310.071