Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1498g00011 ATGACTTCTTCAGATCCCATCTCTTCCAAACACTACACTTACAACAGAAAACAGAAGTCCTTAGGACTTTTGTGTACCAATTTCTTGAGTCTCTATAACCGAGACACAGTGCACTTAATTGGCCTTGATGACGCTGCCACTCGTTTAGGAGTAGAGAGAAGACGGATCTATGACATTGTTAATGTTCTCGAAAGCATTGGGGTTCTCTCGAGGAAAGCAAAAAATCAGTATACCTGGAAAGGTTTTGCTGCAATTCCTCTTACCCTTCGGGAGCTAAAAGAGGATGGGCTGAGGGAGAACTCCAGTTCCTTGCGCGGGTCCACCAACGACGACATGTATAAAGTTTCTGACGACGAAGATGACGAAGAAACACAGTCCAATGCCGCAACTGGAAGTCAAAACGACAAGTTGAACCCTAAATCTATTCAACCCAGATCACTAAAAAATGAAAATCGAAGGGAAAAATCTTTGGCTCTGCTGACCCAGAATTTTGTCAAGCTCTTCGTGTGCTCTAATGTTGAGTTGATCTCCCTTGACGAGGCTGCAAAATTGTTGCTTGGAGACGCTCACAACACCTCAATAATGAGAACAAAAGTTAGACGCCTATATGACATAGCAAATGTGCTATCCTCTATGAACCTTATTGAGAAGACCCATACGTCAGATACAAGAAAACCAGCGTTCAGGTGGTTGGGTCCTGAAGGGAAGACATGGAATGAGTCACTTCACAAATCAAATCAGAACGAGTCTAGGAAAAGGGCGTTTGGGAGTGATATTACAAACATCAGCTTTGAGAGGAATAAGGTGGAACTATTCACAAATGGAGACTTGAATTCTAATCCCAAGAAGCTAAAAATTGAAAATGATAGAGGGCTGGATCAGGCAGATGAAAACAATTTAAAACAAGGTACAAAACAAACTTCGAAGAGCTATCAGTTTGGTCCTTTCGCTCCAGCGTGCGTGCCCGGAGTTGGAGCCTCTGGGAATAATAATGTAAAGCAGGTGCATGACTGGGACGGTCTAGTAACTACACATAGCCCTCAGTATCAAAACGAAGCTTTGAGAGATCTCTTTTCCCATTACATGGAGGCATGGAAATCGTGGTACTCTGAGATTGCTGCAAAAAGACCATTAAAAATTTTGTAA 1146 0.4258 MTSSDPISSKHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELKEDGLRENSSSLRGSTNDDMYKVSDDEDDEETQSNAATGSQNDKLNPKSIQPRSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGPEGKTWNESLHKSNQNESRKRAFGSDITNISFERNKVELFTNGDLNSNPKKLKIENDRGLDQADENNLKQGTKQTSKSYQFGPFAPACVPGVGASGNNNVKQVHDWDGLVTTHSPQYQNEALRDLFSHYMEAWKSWYSEIAAKRPLKIL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1498g00011 381 PANTHER TRANSCRIPTION FACTOR E2F 9 342 IPR015633 GO:0000978|GO:0006357
Vium1498g00011 381 MobiDBLite consensus disorder prediction 126 145 - -
Vium1498g00011 381 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Vium1498g00011 381 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Vium1498g00011 381 FunFam E2F transcription factor-like E2FE 147 234 - -
Vium1498g00011 381 Gene3D - 147 233 IPR036388 -
Vium1498g00011 381 Gene3D - 11 83 IPR036388 -
Vium1498g00011 381 FunFam E2F transcription factor 8 11 83 - -
Vium1498g00011 381 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Vium1498g00011 381 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Vium1498g00011 381 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Vium1498g00011 381 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Vium1498g00011 381 MobiDBLite consensus disorder prediction 98 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1498g00011 Vium-Chr1498 71712 75612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1498g00011 11 378 E2F-DP Transcription Factor Family AT3G48160 54.907 3.58e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vium1498g00011 E2F_TDP 1.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1498g00011 K09391 - gmx:100795252 664.07