Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14988g00001 ATGAACAACTTCACACTTGCATCCATTTTGACTGTCATTTCTGCATTACTCTTCTTAGCAACTCATTTGACTAACACCCCAACAAGAGCCACACAGAAACACCTCCATTTCCAAAAGCACATACAAGTAGCTCAATCCACGTGCCAAGGAACACTCTACCCCGAACTATGTGTCTCAACCCTTGCCACATTCCCAGATCTTACCTCAAAATCTCTCCCACAACTCATTTCTTCTGTGGTCAACCATACCATCTACGAGGTAAAATCATCCTTCTACAACTGCAGCAGCCTCAAAAAGAAGATCAGAAACCTCAACCCACTTGATCAGAGAGCCCTCGATGACTGTCTCAAACTGTTCCAAGACACAAACCTGGAACTCAAAGCCACCATCGATGATCTCTCCAAGAGCACCATTGGGTCCAAGCGCCACCATGACTTGCAGACTCTGCTCAGCGGAGCAATGACCAACTTATACACGTGCCTCGACGGCTTTGCTTACAGCAATGGGCGCGTCAGAGACAGAATCGAGAAGAAGTTGCTTGAGATATCGCATCACATGAGCAACTCCTTGGCCATGCTGAAGAAAGTTCCTGAAGTGAAGAAAACAACTTCGAAATCTGAGGTTTTCCCCGAATATGGAAAGATGAAAAAGGGTTTCCCCTCGTGGGTGTCCCCCAATGACAGAAAGCTTCTCCAAGCGTCTGTCAACGAAACCAAGTTCGATCTCGTCGTTGCCAAAGATGGCACTGGCAATTTCACCACCATAGGGGAAGCACTTGCTGTGGCTCCCAACTCCAGCACAACCAGGTTTGTGATACACATAAAGGAGGGGGCATATTTCGAGAATGTGGAAGTGATCAGGAAGCAGACGAATCTGATGTTTGTTGGAGACGGCATTGGGAAGACAGTAGTGAAAGGTAGTAGGAACGTTGTGGACGGGTGGACAACTTTTCAATCAGCTACTGTTGGTACGTCTTCTTCTTCCTTCCTTCCTTCGGCTAATATTGGATTAATTTTTTAA 1020 0.4637 MNNFTLASILTVISALLFLATHLTNTPTRATQKHLHFQKHIQVAQSTCQGTLYPELCVSTLATFPDLTSKSLPQLISSVVNHTIYEVKSSFYNCSSLKKKIRNLNPLDQRALDDCLKLFQDTNLELKATIDDLSKSTIGSKRHHDLQTLLSGAMTNLYTCLDGFAYSNGRVRDRIEKKLLEISHHMSNSLAMLKKVPEVKKTTSKSEVFPEYGKMKKGFPSWVSPNDRKLLQASVNETKFDLVVAKDGTGNFTTIGEALAVAPNSSTTRFVIHIKEGAYFENVEVIRKQTNLMFVGDGIGKTVVKGSRNVVDGWTTFQSATVGTSSSSFLPSANIGLIF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14988g00001 339 FunFam Pectinesterase 41 198 - -
Vium14988g00001 339 Pfam Pectinesterase 241 330 IPR000070 GO:0030599|GO:0042545
Vium14988g00001 339 PANTHER PECTINESTERASE 14 330 - -
Vium14988g00001 339 Pfam Plant invertase/pectin methylesterase inhibitor 45 192 IPR006501 GO:0004857
Vium14988g00001 339 NCBIfam pectinesterase inhibitor domain 14 195 IPR006501 GO:0004857
Vium14988g00001 339 Gene3D - 235 334 IPR012334 -
Vium14988g00001 339 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 197 IPR035513 -
Vium14988g00001 339 CDD PMEI-like_3 46 197 - -
Vium14988g00001 339 SUPERFAMILY Pectin lyase-like 239 329 IPR011050 -
Vium14988g00001 339 SMART PMEI_2 39 192 IPR006501 GO:0004857
Vium14988g00001 339 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 196 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14988g00001 Vium-Chr14988 15258 16669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14988g00001 68 330 Carbohydrate Esterase AT4G02320 46.014 6.44e-71 228