Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14977g00001 ATGGTGAGAGGAAAGACTCAAATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTAACTTTCTCGAAGCGGCGAAATGGGTTGCTGAAGAAGGCTTTTGAGCTATCAGTTCTTTGTGATGCTGAGGTTTCTCTTATCATCTTCTCTCCAAGAGGGAAGCTCTATGAATTTTCTAGCACCAGCATACATCAGTCAATAGAACGTTACCGCAGACATACCAAAAGTGAAACCTCAACTACGTTCAGATCAGTTGAACAAAACATGCAGCATCTGAAGCAAGAAGCAGCAAACATGATGAAGAAGATTGAACTTCTTGAAGCTGCAAAACGGAAATTCTTGGGAGAAGGTGTGGGGTCTTGCTCCGTTGAGGAATTGCTACGGATAGAACAACAGTTGGAGAGGAGTTTAAGTAATGTTCGAGCAAGAAAGCTCCAGCTTTTCAGGGACCAAATTGAGCAACTGAAAGAAAAGGAAAAAGCCCTAGTAGATGAAAATGCCAAGCTCACTGAAAATGTAAGGCTAGCTGAGAAGAATGGCATGCATCTACAGCTAGCAACAAAGGATCAGAATGAAAATCAACCCCAAAACTGTGCAGAAAGTAGCCCAAGTTCAGATGTGGTGACTGAATTGTTCATTGGACTTCCAGATACAAGAACAAAAGGCCTCTCTCATCAGGTCTAG 681 0.4302 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPRGKLYEFSSTSIHQSIERYRRHTKSETSTTFRSVEQNMQHLKQEAANMMKKIELLEAAKRKFLGEGVGSCSVEELLRIEQQLERSLSNVRARKLQLFRDQIEQLKEKEKALVDENAKLTENVRLAEKNGMHLQLATKDQNENQPQNCAESSPSSDVVTELFIGLPDTRTKGLSHQV 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14977g00001 226 ProSiteProfiles K-box domain profile. 88 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium14977g00001 226 Coils Coil 144 178 - -
Vium14977g00001 226 Coils Coil 81 111 - -
Vium14977g00001 226 FunFam MADS-box protein SOC1 14 96 - -
Vium14977g00001 226 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium14977g00001 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium14977g00001 226 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Vium14977g00001 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Vium14977g00001 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium14977g00001 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium14977g00001 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium14977g00001 226 SUPERFAMILY SRF-like 3 88 IPR036879 GO:0003677|GO:0046983
Vium14977g00001 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium14977g00001 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium14977g00001 226 Coils Coil 122 142 - -
Vium14977g00001 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium14977g00001 226 Gene3D - 14 105 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14977g00001 Vium-Chr14977 27572 46392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14977g00001 1 159 MADS-box Gene Family AT2G45660 76.101 1.11e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium14977g00001 K-box 4.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14977g00001 - - gmx:100807963 361.688