Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14969g00001 ATGGCCACCTTGCAGATGTCCCATGTTGATTTGGAGCAAGGAAACCATCGCCGTTCGGTTGTTGGTAGTGATGCGAGCGTTGAAGGGAGCTTATGCTTCTCTGATGCCGATGATGGGTCTTGCTACTCTCGTTTCTACTCAACCAATGGTGGTTCATATGATGATTACAGCTTTGATTGTGTTTCTGATCCTGAGGCTGGGGGTGTTCCTCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGCTCTGTGGAGTTGGAAACTAGAACTGGGGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGTGAGTGATAGCCATGAGTCTGGTGCCCCCATAGAATTGGGTTGTTCCTGTAAGGATGATTTAGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACTTGTGAAATCTGTCATTCTGTTGCTCGGAATGTTTATGGAGGAAACGAGGATTCGACAGAGCATGTTAGCGACGGTAACAATGGTACTACAGCAGCAGCCACAGTCTCCACAACTGCTCCTTTTACAGAACCTCGAAGATTTTGGCATGGCCATCGCTTCCTCAATTTCTTGCTTGCTTGTATGGTTTTTGCTTTTGTGATATCATGGCTTTTCCACTTCAATGTGACATCGTCGTAG 693 0.4661 MATLQMSHVDLEQGNHRRSVVGSDASVEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFDCVSDPEAGGVPHSGRASSVSECSVELETRTGVPEIKVHLAKVEKDCRICHMGLVSDSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGGNEDSTEHVSDGNNGTTAAATVSTTAPFTEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVTSS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14969g00001 230 PANTHER ZINC FINGER, RING-CH-TYPE 15 228 - -
Vium14969g00001 230 SMART ringv_2 104 157 IPR011016 GO:0008270
Vium14969g00001 230 SUPERFAMILY RING/U-box 102 160 - -
Vium14969g00001 230 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Vium14969g00001 230 CDD RING_CH-C4HC3_MARCH 105 157 - -
Vium14969g00001 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 165 IPR013083 -
Vium14969g00001 230 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14969g00001 Vium-Chr14969 29 3361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14969g00001 74 230 C3H Transcription Factor Family AT5G05830 62.025 9.04e-66 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14969g00001 - - gmx:100808666 417.157