Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1495g00003 ATGGATGCAATCCAAACAGAGAAAGTTTATGTTGCTGTTGGTAATGATGCACAAGATGGATTTAAGGCTTTGAATTGGGCTCTAAAGAAATGGAATTCTCATCCAATTTCCGTTGTTATTCTCCATGTCACACACAATACTCCCATGGATTATGTCTATACACCATTTGGGAAACTTCCAGCAAGATCTGTGAGTGAGGAGAAACTACAAATTCTCAGGAAAGATGAGCAAGAGAAAATCAACAAGCTGTTTGCCAAGTATGTTGCTTTCTGTGGCAAGGTGCCAGCAGAGATTCTTCAAGTTGAGAAATCTGATGAACCAATGCAAAAACGAGTCATAGACTTGATCTTTGGTTTAGGAATAACCAAATTGGTCATGGGATTTTCATTCATGAAGCCCTCCGTGAAATCTAAAGGTGCTATTAGTGGATTGTTCTATGTTCATCAGCACAAGCCTTCCTTCTGCGAGCTGTTCATTATTTGTGGGGGGAAGCAAATTTTCCTGAGAGGAAAAAATGATGAGAAAATCATGGAGGATGATCATGGAGTCATGGTTGCGAGAATAAGAGATAAGATAACCTTCAAAGATTGGTTAGACAAATGGTTCAATGACAAAACCCAGGATTCTCCGGATAAAAGTGAATCAGTTTCCTCAAGAAATTTGGAGTCCCCGGTGACCAGAAACCAGTGGGAATTTTACCTGCAGGAAATTGATAATTATTATCAAGAATTGTTGTCTTCCAAGTTGGAGGAAGGAAACTGCGGGCTAGATAATGACGACTCACAGATTGGTCCAAACGAGCCACATGTCACTGAACACAACAATTATAATATGAGTGGTGCAGAGAAAATTGAAGTCCTGAAAAGTCAGCTGAATGAAGCTCAGAAGACCATTCTATTGAAGAGGAAAGAGGCCAAAGATAGTAAAGAGAGGCATGCAAAAGCTGAATGGGCAATTTGTCTATGCAACAGTCGGGCTGAAGAGGTGGAAGGTCGAATTCGAGAAGAGGTGGGTGCTAAGGAGGAGCTAAAGAAGGAATGGGAAGCGGAGAGAGAGCAGACGGAGGAGATGAGAATGGAGGTGGAAGAGAGGAGGAGGAGACTCAGTTCCCTGACGGAGGTGCAATCGGAGCTCTCCAATAGGCTTCAAATATGGACGCTGGCCAAGACGCGGGCGGAGACGCAGCTCGAGAGGGCGGTAGGGGAGAGAACAGAGATGGTGAGGGAGATCGAGGAGCTCAGGCGCCAGAGAGACGTGCTTAACCGAAGGATCGAGTTCTGCAAACAGAAGGACGCAATTGGAATGGCGGCCAGGCTCGCCGACACGCGCTGCACCTTCCGCGAGTACACGGCGGAGGAGATCCGGTTGGCCACCGACAACTTCTCCGAGCGGCTGAGGTTGAAGTCCGGTGGAGATTGGAGCAATGTTTACCGGGGACGCTTCAACCACTCCACTGTTGCCATCAAGATGCTCCCTTCTTTCTCCCTCCAACATTTCCAATCCAAGGTGAGGCTTCTTGGTGATATTAGGCATCCTCATCTGATTGCCATGGCGGGGTTTTGCTCCGAGCCCAAATGCATAGTTTTGGAATACATGCGCAACGGAAGCTTAAGAGACATGCTGTTTTCTAGGAGAAAAAACCGCGTTATAAGATGGTACGACCGAATACGAATTGCCACAGAAGTTTGTTCAGGCCTGGGCTTTCTCAATGGAGCTGAACCAAGGCCCGTCGTTCACTGCCATTTGACCCCATCCACAGTCCTCCTAGACCGCAATTTGGTGGCAAAGATAACGGGCTTTGGTCTCCATGATTGCCGTGACGAACAGTGTAACGTCGAGTCAGATTTGCAGGCTATAGGGGTTTTGTTGATGCATCTTTTGACAGGAAGAAATTGGGCCGGGCTGATTGAGGAGGTGATGGCCGTGGATATGGACAGAGAGGCTTTGGCTAGCGTTCTTGATGAGATGGCTGGGCAATGGCCATTGGATCTAGCAATAGAACTTGCAGGCCTGGCTTTGATGTGTGTGTCCACGAAAAGCAATAGAACTTCAGAACTGAGCATTGCAAAGGTCTTGGAGGAACTGAATGAGATAAGAAGAAAGGGGGATGAAATAGTTGGAAGGGAAGGACGAAAGGCAATTATTGGTGGGTGTGTAGATAGAGAGGGAACCAGTGATGTGCCTAGTGTTTTTCTTTGCCCCATACTTCAGGAGGTAATGAAAAACCCACACTTGGCAGCAGATGGGTTTTCTTATGAGCTTGAAGCAATAGACCACTGGCTGCAATCGGGGCGTGACACATCACCAATGACAAATCTGAGGCTGAAACACACATTCCTCACCCCGAATCACACTCTCCGTTCCCTAATTGAGGATTGGCAGACCAATAAACCACCTAAACTTACACACTAA 2412 0.4668 MDAIQTEKVYVAVGNDAQDGFKALNWALKKWNSHPISVVILHVTHNTPMDYVYTPFGKLPARSVSEEKLQILRKDEQEKINKLFAKYVAFCGKVPAEILQVEKSDEPMQKRVIDLIFGLGITKLVMGFSFMKPSVKSKGAISGLFYVHQHKPSFCELFIICGGKQIFLRGKNDEKIMEDDHGVMVARIRDKITFKDWLDKWFNDKTQDSPDKSESVSSRNLESPVTRNQWEFYLQEIDNYYQELLSSKLEEGNCGLDNDDSQIGPNEPHVTEHNNYNMSGAEKIEVLKSQLNEAQKTILLKRKEAKDSKERHAKAEWAICLCNSRAEEVEGRIREEVGAKEELKKEWEAEREQTEEMRMEVEERRRRLSSLTEVQSELSNRLQIWTLAKTRAETQLERAVGERTEMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLADTRCTFREYTAEEIRLATDNFSERLRLKSGGDWSNVYRGRFNHSTVAIKMLPSFSLQHFQSKVRLLGDIRHPHLIAMAGFCSEPKCIVLEYMRNGSLRDMLFSRRKNRVIRWYDRIRIATEVCSGLGFLNGAEPRPVVHCHLTPSTVLLDRNLVAKITGFGLHDCRDEQCNVESDLQAIGVLLMHLLTGRNWAGLIEEVMAVDMDREALASVLDEMAGQWPLDLAIELAGLALMCVSTKSNRTSELSIAKVLEELNEIRRKGDEIVGREGRKAIIGGCVDREGTSDVPSVFLCPILQEVMKNPHLAADGFSYELEAIDHWLQSGRDTSPMTNLRLKHTFLTPNHTLRSLIEDWQTNKPPKLTH 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1495g00003 803 ProSiteProfiles Protein kinase domain profile. 462 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1495g00003 803 Pfam Protein tyrosine and serine/threonine kinase 471 606 IPR001245 GO:0004672|GO:0006468
Vium1495g00003 803 ProSiteProfiles U-box domain profile. 726 800 IPR003613 GO:0004842|GO:0016567
Vium1495g00003 803 SUPERFAMILY RING/U-box 724 797 - -
Vium1495g00003 803 Pfam U-box domain 727 796 IPR003613 GO:0004842|GO:0016567
Vium1495g00003 803 Coils Coil 396 430 - -
Vium1495g00003 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 725 800 IPR013083 -
Vium1495g00003 803 PANTHER OS02G0152300 PROTEIN 9 791 - -
Vium1495g00003 803 Coils Coil 326 371 - -
Vium1495g00003 803 CDD RING-Ubox_WDSUB1-like 728 783 - -
Vium1495g00003 803 SUPERFAMILY Protein kinase-like (PK-like) 445 656 IPR011009 -
Vium1495g00003 803 Coils Coil 284 311 - -
Vium1495g00003 803 Gene3D Phosphorylase Kinase; domain 1 436 531 - -
Vium1495g00003 803 Gene3D Transferase(Phosphotransferase) domain 1 533 706 - -
Vium1495g00003 803 SMART Ubox_2 730 793 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1495g00003 Vium-Chr1495 17720 21812 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1495g00003 7 802 U-box Gene Family AT5G65500 49.444 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium1495g00003 PK_Tyr_Ser-Thr 1.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1495g00003 - - gmx:100786771 1349.73