Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1494g00003 ATGGCATCATCGAGCTCCTACAATTCTCCTTGTGCTGCCTGCAAGTTCTTGAGGAGGAAATGCCTTTCAGGGTGCATCTTTGCACCATACTTCCCACCGGAAGAGCCTCAGAAGTTCGCGAACGTGCACAAGATATTCGGTGCCAGCAATGTGACGAAGCTTCTGAACGAGCTTCTTCCTCACCAGAGGGAAGATGCAGTGAATTCCCTTGCCTATGAAGCTGAGGCACGTGTGAGAGACCCAGTTTATGGGTGCGTAGGAGCCATCTCTTTTCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATTCTGCCAATGCTGATCTCCTTCGCTATGCCTACAATGACATGCCTTCACCCTCTCTTTCTGTGCCACCAGCAATGACAGCAACAACAATTCAACAAATTCCCCAAAGGTCTTTCAATGCAAGGTTTGGAAATGAAGCAAGTGGGCTTTATAGGCCCTCTCCCACCATCACTTACAACTCCTACCCTTATTCTCTTCCATGGACTGATACCTCTCCTGAAGATATCAATGATGGAGGAGGAGAAGGAGGAGGTAATAACTTGTGA 576 0.4809 MASSSSYNSPCAACKFLRRKCLSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYAYNDMPSPSLSVPPAMTATTIQQIPQRSFNARFGNEASGLYRPSPTITYNSYPYSLPWTDTSPEDINDGGGEGGGNNL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1494g00003 191 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vium1494g00003 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 129 - -
Vium1494g00003 191 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Vium1494g00003 191 Coils Coil 89 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1494g00003 Vium-Chr1494 32181 34493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1494g00003 1 189 AS2 family AT5G63090 63.636 5.98e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium1494g00003 LOB 9.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1494g00003 - - gmx:100800614 311.227