Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14940g00004 ATGTCGAGGATTTGTGTGAAGAATCTTCTTAAACATGTTGCGGAGGATGAACTACGGGAATTCTTTTCTGAGAAAGGAATAATCACTGACGTCAAGCTCATGCGTACCAAAGATGGTAAGGGTAGGCAATTCGCGTTTATAGGGTATCGAACAGAAAAGGAAGCTCATCAAGCCATTCGATATTTCAATAATTCTTTCCTTCGCACATCTAAAATTACATGTGAGGTAGCTCAAAAACTTGGGGACGAAAATCTTCCTCGTCCATGGAGTCGCCATTCGAAGAAGAAAGACGACAAAGGGACTGTGCCGGATGTGGGGAAACCTGCTAGAGCTAAGGGCTGGAAAGAAAATTTGAAGAATGGTGTGGATGTTGATGACCCACAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAACTCTAAGATGTGGGCAAATGATACTTCCGGTTTGACCAGTGTTGGCAACAACAGAGCAGTCTCAAATAAGGATAATGAAGGTGCATCAGTTTCAACTGATGACAGTGGCTCATTGGAAGATGGATTTCTGGATATTTCCGAACCCAGTGGCAAGTCACATGAGCTTGACCGTGATGAGGTCATTTCAGATATGGATTATTTCAAGAGTAGGGTGACAAAAGAGTGGTCTGATTCTGAAAGTGGTCATGAAGATAATCACGGCAATGATGATAATGATGCCTCACTAATGACAATGATGACAACGATGATAATAGTAGTGTTAATGAAGATGGAAAAAGAAGTCATCCAACAATGTAGGGATGCTCCACTATACTTGGAGTGAGCTCCTTCCAATATTCTTAGCGAAAGTTCAACATCAAAAAATGATGACATGAATGGTGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAAAACGTGGAAAGAATAACAGATGTTGATATTGATCCAGACAGAGTAGAGGCTCGGTCCCTATTTGTCAAGAACATAAATTTCAAGACAACAGATGAAAATCTGAGGAAACATTTTAGTGAACTCATGAAAGACGGAAGAATTTTGAGTGTGAAGGTACTTTTTAATTGCTAA 1074 0.4078 MSRICVKNLLKHVAEDELREFFSEKGIITDVKLMRTKDGKGRQFAFIGYRTEKEAHQAIRYFNNSFLRTSKITCEVAQKLGDENLPRPWSRHSKKKDDKGTVPDVGKPARAKGWKENLKNGVDVDDPQLQDFLQVMQPRVNSKMWANDTSGLTSVGNNRAVSNKDNEGASVSTDDSGSLEDGFLDISEPSGKSHELDRDEVISDMDYFKSRVTKEWSDSESGHEDNHGNDDNDASLMTMMTTMIIVVLMKMEKEVIQQCRDAPLYLEXAPSNILSESSTSKNDDMNGAIGENDAKRQILEQNVERITDVDIDPDRVEARSLFVKNINFKTTDENLRKHFSELMKDGRILSVKVLFNC 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14940g00004 357 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Vium14940g00004 357 Gene3D - 1 117 IPR012677 -
Vium14940g00004 357 Gene3D - 270 357 IPR012677 -
Vium14940g00004 357 MobiDBLite consensus disorder prediction 85 121 - -
Vium14940g00004 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Vium14940g00004 357 CDD RRM1_MRD1 2 77 - -
Vium14940g00004 357 MobiDBLite consensus disorder prediction 144 177 - -
Vium14940g00004 357 SUPERFAMILY RNA-binding domain, RBD 308 356 IPR035979 GO:0003676
Vium14940g00004 357 PANTHER RNA BINDING PROTEIN 4 79 - -
Vium14940g00004 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Vium14940g00004 357 MobiDBLite consensus disorder prediction 144 198 - -
Vium14940g00004 357 FunFam RNA-binding motif protein 19 1 100 - -
Vium14940g00004 357 SMART rrm1_1 3 75 IPR000504 GO:0003723
Vium14940g00004 357 MobiDBLite consensus disorder prediction 83 121 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14940g00004 1 85 Eukaryotic Initiation Factors Gene Family AT2G36660 36.471 7.90e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14940g00004 K14787 - vum:124822831 699.508