Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14940g00001 ATGAAAGAGGAAAGTGCAGAGGAAGTAGTATCTGATGAAGAAGCTTATCTGTTTGCCATGGAGCTAGCTGGTGCCTCTGCTGTTCCCATGGTTCTGAAGTCAGCCATTGAACTTGGCATCTTGGAAACCATAGCCAAGGCTGGTCCTGGAGCTCATCTTTCTCCTTCTGAAATAGCTGCTCAGATACCAAATATAAAGAACCCTAATGCACCTGCTATGTTGGACCGCATGTTCCGCCTTTTGGTTAGCTACAACATCCTCAAACTTCGATTCCCCGATGATAATATGGCTGAAAGGCACTATGCTCTTCACCCAAAAGCCAAATACCTTGTCAACAATCAAGATGCTGTCTCTGTGTCTGCTTACTTTCTCATGGAACACGACAAAGTCCTCACAGAAATGTGGTACAAGTTGACAGAATCAGTTGAGGAGGGTGGATTTCCATTTAACAATGCTTATGGAATGAATGCCTTTGAGTTCCATGATGCAAATCCAAGATTTAATAGGCTTTTCAATAAGGGGTTGTCTGATTGCTCTAGCATCACGATGAAGAAAATTCTTGAGATTTACAAAGGGTTTGAGGGTGTTGGATCTTTGGTTGATGTTGGGGGTGGAACTGGGGCTATCATCGGCATGATTGCCTCCAAGTATTCCTCCATAAAGTGTCTTAATTTTGACTTACCCCACGTTATCAAAGAAGCTCCATCTTATGCAGGTGTGGAACATGTGGGTGGAGACATGTTTGTGAGTGTTCCAAAAGCTGACGCTATTTTTATGAAGTGGGTATGCCATGACTGGAATGATGAGCAATGCTTGAAATTGTTGAAGAACTGTTATGATTCTCTTCCTGACACTGGAAAGGTTATTTTAGTTGAAGGGCTTATTCCAGAAACCCCAAATTCTAATTTAGCTTCAAAGTGTGAGTTTCAAATGGATATTGTGATGTTGTGTCATAGCCCAAATGGAAAAGAGAGAACAGAGAAAGAATACAAGGCTTTGGCTAAAGGAGCTGGATTCCATAGTTTCAGAATAACATGTTGTGTTTTCAATACTTATGTTATGGAGTTCCTTAAAAAGGCTTAA 1083 0.4127 MKEESAEEVVSDEEAYLFAMELAGASAVPMVLKSAIELGILETIAKAGPGAHLSPSEIAAQIPNIKNPNAPAMLDRMFRLLVSYNILKLRFPDDNMAERHYALHPKAKYLVNNQDAVSVSAYFLMEHDKVLTEMWYKLTESVEEGGFPFNNAYGMNAFEFHDANPRFNRLFNKGLSDCSSITMKKILEIYKGFEGVGSLVDVGGGTGAIIGMIASKYSSIKCLNFDLPHVIKEAPSYAGVEHVGGDMFVSVPKADAIFMKWVCHDWNDEQCLKLLKNCYDSLPDTGKVILVEGLIPETPNSNLASKCEFQMDIVMLCHSPNGKERTEKEYKALAKGAGFHSFRITCCVFNTYVMEFLKKA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14940g00001 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168
Vium14940g00001 360 CDD AdoMet_MTases 199 291 - -
Vium14940g00001 360 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Vium14940g00001 360 SUPERFAMILY "Winged helix" DNA-binding domain 12 113 IPR036390 -
Vium14940g00001 360 FunFam Caffeic acid 3-O-methyltransferase 1 110 - -
Vium14940g00001 360 Pfam Dimerisation domain 30 82 IPR012967 GO:0046983
Vium14940g00001 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 118 356 IPR029063 -
Vium14940g00001 360 FunFam Caffeic acid O-methyltransferase 111 358 - -
Vium14940g00001 360 Gene3D Vaccinia Virus protein VP39 111 358 IPR029063 -
Vium14940g00001 360 PANTHER O-METHYLTRANSFERASE 19 342 IPR016461 GO:0008168
Vium14940g00001 360 Gene3D - 1 110 IPR036388 -
Vium14940g00001 360 Pfam O-methyltransferase domain 135 339 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14940g00001 Vium-Chr14940 4091 6808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14940g00001 10 359 Monolignol Biosynthesis Gene Families AT5G54160 59.091 7.01e-156 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14940g00001 K13066 - gmx:100780100 474.167