Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14938g00002 ATGTCATTTCCAGCAAGTCCAAGTATTAAGTTTCTTGGCTCTACACCAAATTTTGGAAATGTTTACCAATCTTCTTCCATTGTGGGGAATCAGCTGGGTGTCGAAGAAGATTATCACACTTTTTTCATCGATGTGCCATTTCAGGTAGAAAATGACGGTAAACCCTGCAGGAAACAATTGATAGACAGGAACCTTGACTTGCATCCTCTGGAAGGGAGTGGTGACATAAAGAGTATAAAAAGTAACATAAACAGAGAAACTAATTTTCTGCCACTTCATATAAAAAGAAAAACTTTAGACGGCAAAAGAACTAGTTCTAGTCCTGTTTCAGAAAAGGGTAGCTCTAGATATTTGTCAACAGAGCATTCTGGATCAACCTTGGGTGTGGAAAGAGGCCATGGAAGAAACTTGCTTGCTGATTCACCAAAGAAACAAACGGCACCAAGTCCTTCTCCTACACCAGCCAGTTCTCCATTATCACCAAGTAATGGTCCAACACCAGCCAGATCTCCATTATCACCAAGTCATGCACCAACACCAGCCACTTCTCCACCATCAACACCACCTCCTACTCCCAAAAAAAAGGATTTACCACTCCCAAAAGATATGTTTGCACCATTTCCACCTCTACCCCCTATAGCTCGTTCTCCTCCCAAAAATTCTAAACCTACAGTCCAGACTCCTGCTCCTCCAACATCTAGCGCTGATGACAAAAAGAAGAAAACAATTATTTTAGCTACCACTTTATCAGGTGTTGTAATCTTGATAGGCTTGTTCCTATGCTATCGTGAGACCAAAAAGAAGAGAAGTGATAGGGATGACAGGCCTTTGCTCGTATTAACCTCGGATGATTATACTGGCGGTACAAGGAAGGTTGTTCAATTAGGAAATTCTAGAAGGGATGAATATGGCATTGGCGATGGAAAGAACCCTTCTCATGTTAGAAATTTGTCCAGTAGGAAGGGTGTAGATGTCAACGTCTCAATGGTTGACATAGCATCATCATCATCAGAAGGCGGAAGAAAACTAACAGTATCCCCTAGTGTAAAGTCTGACCCTCCTCCTCCTCCTCCTCCCCCACCTCCTCCTTCTTCTTCTTCTTCTCTTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCATCTTCTTCCTCTTCTTCTACTCCTCCTCCTGGCCGTACTGCTGGACCACCACCACCACCTCCTCCCGCTAATCGTACACCGCCGCCCCCAAAAGGTGCTCATGCTCCGCCAGCTCCTCCCAAACCAGTTGGAGGTGCGAATCATGGACCACTACTTCCTAAAGAAGGAAGTTCAAATGACGGCGATGCTCAAGCTCCAAAACCAAAACTAAAGCCATTTTTTTGGGATAAGGTTAATGCAAAGCCTGGCCAAACAATGGTGTGGCATGAGATCAGTTCGGGATCATTCGTGATCAATGAGGAAATGATGGAGTCTTTATTTGGCTGCGCCAACCAGAACAAGAATGATCGCAAAAGAGATTCATCCTTAGAAAATTCAGTGCAATATATTAAGCTTATTGATCCTAGGAAAGCACAGAACTTGTCAATTCTTTTGCGAGCTCTGAACGTCACAACAGAAGAAGTTGTCGATGCTCTTGTAGAAGGAAATGAGATTCCTATTGAGCTGATACAGACGTTGCTGAAGATGGCACCTACACAAGATGAGGAACTGAAGCTAAGGCTATTCACAGGACAACTGCATGAACTAGGCCCAGCAGAGAGGTTTCTCAAAGTGTTGATTGAGATACCATTCGCTTTCAAACGTCTTGAATGTCTGTTGTTCATGCATAACCTTCAAGAAGATTTCTCAAGCATTAAGGAATCCTTTGCCACGTTAGAGGTGGCAAGCAACGATCTGAGAAAAAGCAGGCTATTCCTGAAACTCCTAGAAGCAGTTCTGAAAACCGGCAACCGTATGAATGACGGAACCTACCGCGGCCGTGCGCAAGCATTCAGGCTCGACACCCTCCTCAAACTCTCCGACGTCAAGGGAACAGACGGCAAGACCACGCTCCTGCACTTCGTCGTCGAGGAGATCATCCGCTCCGAGGGAATCCGCGCCGCGCGCAACGAAAGAGCCAGCCGGAGCATCTCTAGCGTCAACACCAGCGACGAATCCGACGAGGGCGAGGAGTCCGAGGAGCACTACCGCAGCGTCGGCCTCCAGGTGGTGTCGAGCCTCGGTGCGGAACTCGAGGCCGTGAAGAAGGCGGCGCTGATAGACGGCGACGCGCTCACCACGACGGTGTCGAAGCTGGGGCACTCGTTGGTGAAGACGCAGAATTTTCTTGACACGGAAATGAAGAACATCGCGGAAGAGAGCGAGTTCCAGAACAGCATGGAGCAGTTCATGGTAAACGCGAGGAAGGAGGTGATGTGGATGGTGGAGGAGGAGAAGAGGATAATGGCGCTGGTTAAGAGCACTGCCGATTACTTTCACGGCAATGCCGGGAAGGATGAAGGTTTACGTTTGTTCCTAATCGTACGTGATTTCTTGATCATATTGGACAAGGTTTGCAAAGAAGTGAGGGACACGACCATGACGCCGGCGAAGGCTCCCACCACTACCAAGAAGAAGCCTAAGACTCCTACGGCTTCTTCCCCTAACGCGCGTAATCCAGATTCGCCAAAGCCATCCACTAATCTCCACAGTAAGCTCTTTCCTGCCATTGCTGGGAGGAGAATGGATTACTCTAGCTCTGATAGCTCCGATGATGACGACGACTAA 2745 0.4758 MSFPASPSIKFLGSTPNFGNVYQSSSIVGNQLGVEEDYHTFFIDVPFQVENDGKPCRKQLIDRNLDLHPLEGSGDIKSIKSNINRETNFLPLHIKRKTLDGKRTSSSPVSEKGSSRYLSTEHSGSTLGVERGHGRNLLADSPKKQTAPSPSPTPASSPLSPSNGPTPARSPLSPSHAPTPATSPPSTPPPTPKKKDLPLPKDMFAPFPPLPPIARSPPKNSKPTVQTPAPPTSSADDKKKKTIILATTLSGVVILIGLFLCYRETKKKRSDRDDRPLLVLTSDDYTGGTRKVVQLGNSRRDEYGIGDGKNPSHVRNLSSRKGVDVNVSMVDIASSSSEGGRKLTVSPSVKSDPPPPPPPPPPPSSSSSLPPPPPPPPPPSSSSSSTPPPGRTAGPPPPPPPANRTPPPPKGAHAPPAPPKPVGGANHGPLLPKEGSSNDGDAQAPKPKLKPFFWDKVNAKPGQTMVWHEISSGSFVINEEMMESLFGCANQNKNDRKRDSSLENSVQYIKLIDPRKAQNLSILLRALNVTTEEVVDALVEGNEIPIELIQTLLKMAPTQDEELKLRLFTGQLHELGPAERFLKVLIEIPFAFKRLECLLFMHNLQEDFSSIKESFATLEVASNDLRKSRLFLKLLEAVLKTGNRMNDGTYRGRAQAFRLDTLLKLSDVKGTDGKTTLLHFVVEEIIRSEGIRAARNERASRSISSVNTSDESDEGEESEEHYRSVGLQVVSSLGAELEAVKKAALIDGDALTTTVSKLGHSLVKTQNFLDTEMKNIAEESEFQNSMEQFMVNARKEVMWMVEEEKRIMALVKSTADYFHGNAGKDEGLRLFLIVRDFLIILDKVCKEVRDTTMTPAKAPTTTKKKPKTPTASSPNARNPDSPKPSTNLHSKLFPAIAGRRMDYSSSDSSDDDDD 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14938g00002 914 MobiDBLite consensus disorder prediction 855 914 - -
Vium14938g00002 914 MobiDBLite consensus disorder prediction 202 218 - -
Vium14938g00002 914 MobiDBLite consensus disorder prediction 296 448 - -
Vium14938g00002 914 MobiDBLite consensus disorder prediction 349 425 - -
Vium14938g00002 914 SMART it6_source 439 857 IPR015425 -
Vium14938g00002 914 SUPERFAMILY Formin homology 2 domain (FH2 domain) 395 853 - -
Vium14938g00002 914 MobiDBLite consensus disorder prediction 147 194 - -
Vium14938g00002 914 ProSiteProfiles Formin homology-2 (FH2) domain profile. 439 867 IPR015425 -
Vium14938g00002 914 MobiDBLite consensus disorder prediction 855 888 - -
Vium14938g00002 914 PANTHER FORMIN-RELATED 230 904 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vium14938g00002 914 MobiDBLite consensus disorder prediction 103 126 - -
Vium14938g00002 914 Gene3D Formin, FH2 domain 445 874 IPR042201 -
Vium14938g00002 914 Pfam Formin Homology 2 Domain 441 841 IPR015425 -
Vium14938g00002 914 MobiDBLite consensus disorder prediction 219 233 - -
Vium14938g00002 914 MobiDBLite consensus disorder prediction 697 721 - -
Vium14938g00002 914 MobiDBLite consensus disorder prediction 312 344 - -
Vium14938g00002 914 MobiDBLite consensus disorder prediction 99 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14938g00002 Vium-Chr14938 28650 35109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14938g00002 428 902 FH2 protein (formin) Gene Family AT5G54650 61.954 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14938g00002 - - vum:124821202 925.235