Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14938g00001 ATGTCGAGGAGAAAGGTTAAAGAGCCAAAAGAAGAAAATGTGACTCTAGGTCCAGCCGTTAGAGACGGTGAGCATGTCTTTGGCGTCGCTCGCATCTTTGCCTCCTTCAATGACACCTTCATTCATGTCATTGATTTGTATGGAAGGGAAACACTTGTCCGTATCACTGGTGGGATGAAGGTTAAAGCTGATAGAGATGAATCATCTCCTTATGCTGCTATGCTTGCAGCACAAGATGTTGCTACCAGATGCAAGGAGTTGGGCATAACTGCTCTTCATATCAGGCTCCGCGCCACTGGTGGAAACAAAACTACAGGGACTGCCATCACTAACTGA 336 0.4643 MSRRKVKEPKEENVTLGPAVRDGEHVFGVARIFASFNDTFIHVIDLYGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIRLRATGGNKTTGTAITN 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14938g00001 111 FunFam 40S ribosomal protein S14 1 109 - -
Vium14938g00001 111 Gene3D Ribosomal protein S11 1 109 IPR036967 GO:0003735|GO:0005840|GO:0006412
Vium14938g00001 111 SUPERFAMILY Translational machinery components 23 103 - -
Vium14938g00001 111 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 3 100 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vium14938g00001 111 Pfam Ribosomal protein S11 28 104 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vium14938g00001 111 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 1 109 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vium14938g00001 111 Coils Coil 109 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14938g00001 Vium-Chr14938 20863 21206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14938g00001 1 104 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 86.538 8.84e-65 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14938g00001 K02955 - gmx:100306566 199.519